Variant report

Variant	rs60600157
Chromosome Location	chr14:72216750-72216751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55647033	1.00[AMR][1000 genomes]
rs55843519	1.00[AMR][1000 genomes]
rs55893880	1.00[AMR][1000 genomes]
rs56135446	1.00[AMR][1000 genomes]
rs56335120	1.00[AMR][1000 genomes]
rs56861516	1.00[AMR][1000 genomes]
rs57476769	1.00[AMR][1000 genomes]
rs58376035	1.00[AMR][1000 genomes]
rs58529740	1.00[AMR][1000 genomes]
rs59405734	1.00[AMR][1000 genomes]
rs60239886	1.00[AMR][1000 genomes]
rs74060369	1.00[AMR][1000 genomes]
rs74060373	1.00[AMR][1000 genomes]
rs74060376	1.00[AMR][1000 genomes]
rs74060385	1.00[AMR][1000 genomes]
rs74060386	1.00[AMR][1000 genomes]
rs74060387	1.00[AMR][1000 genomes]
rs74060390	1.00[AMR][1000 genomes]
rs74060391	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1047559	chr14:72151736-72282151	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72206000-72219600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:72207200-72221400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:72214200-72220000	Enhancers	K562	blood
4	chr14:72215400-72220200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:72215800-72220800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:72216200-72216800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:72216200-72216800	Enhancers	Pancreas	Pancrea
8	chr14:72216400-72217200	Enhancers	Dnd41	blood
9	chr14:72216600-72216800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:72216600-72216800	Enhancers	GM12878-XiMat	blood
11	chr14:72216600-72217000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:72216600-72219400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:72216600-72220200	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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