Variant report

Variant	rs74060369
Chromosome Location	chr14:72041675-72041676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SIPA1L1-2	chr14:72040206-72041803	NONHSAT037640

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55647033	1.00[AMR][1000 genomes]
rs55843519	1.00[AMR][1000 genomes]
rs55893880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56135446	1.00[AMR][1000 genomes]
rs56335120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56861516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57476769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58376035	1.00[AMR][1000 genomes]
rs58529740	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59405734	1.00[AMR][1000 genomes]
rs59476175	0.82[AFR][1000 genomes]
rs59553790	0.82[AFR][1000 genomes]
rs60239886	1.00[AMR][1000 genomes]
rs60600157	1.00[AMR][1000 genomes]
rs74060357	0.82[AFR][1000 genomes]
rs74060363	0.82[AFR][1000 genomes]
rs74060373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060386	1.00[AMR][1000 genomes]
rs74060387	1.00[AMR][1000 genomes]
rs74060390	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72024400-72052400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:72030600-72048800	Weak transcription	Fetal Kidney	kidney
3	chr14:72031000-72052600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:72032000-72042800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:72032400-72041800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:72035200-72053400	Weak transcription	Spleen	Spleen
7	chr14:72035600-72054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:72037200-72051000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:72038000-72041800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:72039400-72064400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:72039600-72042400	Enhancers	GM12878-XiMat	blood
12	chr14:72040000-72042000	Enhancers	Dnd41	blood
13	chr14:72040000-72042800	Enhancers	Fetal Stomach	stomach
14	chr14:72040000-72043200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:72040000-72043600	Enhancers	Fetal Heart	heart
16	chr14:72040000-72044200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:72040200-72042200	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:72040200-72042200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr14:72040200-72043000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:72040200-72043200	Enhancers	Fetal Lung	lung
21	chr14:72040200-72043400	Enhancers	Brain Hippocampus Middle	brain
22	chr14:72040200-72043400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr14:72040200-72043400	Enhancers	Osteobl	bone
24	chr14:72040400-72041800	Weak transcription	Aorta	Aorta
25	chr14:72040400-72042000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:72040400-72042000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:72040400-72042000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr14:72040400-72042400	Enhancers	Colon Smooth Muscle	Colon
29	chr14:72040400-72043400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:72040600-72042600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr14:72040800-72041800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr14:72040800-72042200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr14:72040800-72042200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr14:72040800-72042200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr14:72040800-72042400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:72040800-72042400	Enhancers	NHLF	lung
37	chr14:72040800-72043000	Enhancers	HSMMtube	muscle
38	chr14:72040800-72043400	Enhancers	Brain Cingulate Gyrus	brain
39	chr14:72040800-72048800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:72041000-72041800	Enhancers	NH-A	brain
41	chr14:72041000-72042000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr14:72041000-72042000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:72041000-72042200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:72041000-72042200	Enhancers	Fetal Muscle Leg	muscle
45	chr14:72041000-72042400	Enhancers	Stomach Mucosa	stomach
46	chr14:72041000-72042800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:72041000-72043200	Enhancers	HSMM	muscle
48	chr14:72041000-72043600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:72041000-72043600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:72041000-72044000	Enhancers	Brain Anterior Caudate	brain

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