Variant report

Variant	rs59553790
Chromosome Location	chr14:71911995-71911996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71910831..71913161-chr14:71915505..71918179,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55763740	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55893880	0.82[AFR][1000 genomes]
rs55898000	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56335120	0.82[AFR][1000 genomes]
rs56373366	1.00[AMR][1000 genomes]
rs57476769	0.82[AFR][1000 genomes]
rs59476175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60615402	1.00[AMR][1000 genomes]
rs61336865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060325	1.00[AMR][1000 genomes]
rs74060342	1.00[AMR][1000 genomes]
rs74060343	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060348	1.00[AMR][1000 genomes]
rs74060350	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060360	1.00[AMR][1000 genomes]
rs74060363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060369	0.82[AFR][1000 genomes]
rs74060373	0.82[AFR][1000 genomes]
rs74060376	0.82[AFR][1000 genomes]
rs74060385	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
2	chr14:71900000-71927200	Weak transcription	Primary B cells from cord blood	blood
3	chr14:71900200-71915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:71900400-71915400	Weak transcription	Gastric	stomach
5	chr14:71901400-71915800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:71905600-71919200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr14:71905800-71912600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:71905800-71915400	Weak transcription	Small Intestine	intestine
9	chr14:71906400-71927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:71906600-71912600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:71907000-71912600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:71907000-71918800	Weak transcription	HMEC	breast
13	chr14:71907000-71930000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:71907000-71930600	Weak transcription	HSMM	muscle
15	chr14:71907200-71915200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:71907200-71915400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:71907200-71921400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:71907400-71915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:71907400-71921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:71907600-71912200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
22	chr14:71908400-71912600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:71908400-71915800	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:71908600-71913000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:71909800-71913400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:71910200-71912800	Enhancers	Adipose Nuclei	Adipose
27	chr14:71910400-71912200	Enhancers	Fetal Heart	heart
28	chr14:71910400-71914200	Enhancers	GM12878-XiMat	blood
29	chr14:71910600-71912000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:71910800-71912200	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:71911400-71912800	Enhancers	NHDF-Ad	bronchial
32	chr14:71911400-71913200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:71911600-71915400	Weak transcription	Ovary	ovary
34	chr14:71911800-71912600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:71911800-71912600	Weak transcription	Aorta	Aorta
36	chr14:71911800-71912600	Weak transcription	Spleen	Spleen
37	chr14:71911800-71918800	Weak transcription	Osteobl	bone
38	chr14:71911800-71921600	Weak transcription	Brain Angular Gyrus	brain

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