Variant report

Variant	rs74060342
Chromosome Location	chr14:71767067-71767068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55763740	1.00[AMR][1000 genomes]
rs55898000	1.00[AMR][1000 genomes]
rs56236057	0.86[AFR][1000 genomes]
rs56373366	1.00[AMR][1000 genomes]
rs59476175	1.00[AMR][1000 genomes]
rs59553790	1.00[AMR][1000 genomes]
rs60615402	1.00[AMR][1000 genomes]
rs61336865	1.00[AMR][1000 genomes]
rs74060325	1.00[AMR][1000 genomes]
rs74060343	1.00[AMR][1000 genomes]
rs74060348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060350	1.00[AMR][1000 genomes]
rs74060357	1.00[AMR][1000 genomes]
rs74060360	1.00[AMR][1000 genomes]
rs74060363	1.00[AMR][1000 genomes]
rs74060599	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71758400-71770000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:71758600-71772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:71762400-71771400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:71763200-71771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:71766600-71768200	Enhancers	Dnd41	blood
6	chr14:71767000-71767600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:71767000-71768200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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