Variant report

Variant	rs74060363
Chromosome Location	chr14:71965649-71965650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55763740	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55893880	0.82[AFR][1000 genomes]
rs55898000	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56335120	0.82[AFR][1000 genomes]
rs56373366	1.00[AMR][1000 genomes]
rs57476769	0.82[AFR][1000 genomes]
rs59476175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59553790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60615402	1.00[AMR][1000 genomes]
rs61336865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060342	1.00[AMR][1000 genomes]
rs74060343	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060348	1.00[AMR][1000 genomes]
rs74060350	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060360	1.00[AMR][1000 genomes]
rs74060369	0.82[AFR][1000 genomes]
rs74060373	0.82[AFR][1000 genomes]
rs74060376	0.82[AFR][1000 genomes]
rs74060385	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71935400-71980400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:71946000-71995600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:71954400-71978200	Weak transcription	Primary T cells from cord blood	blood
4	chr14:71956000-71971200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:71956000-71979800	Weak transcription	Aorta	Aorta
6	chr14:71959000-71967200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:71959400-71977600	Weak transcription	Fetal Brain Male	brain
8	chr14:71963000-71979600	Weak transcription	Primary B cells from cord blood	blood
9	chr14:71963200-71966400	Enhancers	Dnd41	blood
10	chr14:71963800-71966200	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:71964000-71966200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:71964000-71966200	Flanking Active TSS	GM12878-XiMat	blood
13	chr14:71964200-71965800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:71964200-71966200	Enhancers	NHEK	skin
15	chr14:71964400-71966200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr14:71964800-71979600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:71964800-71979600	Weak transcription	Hela-S3	cervix
18	chr14:71965000-71979600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:71965000-71979600	Weak transcription	HSMMtube	muscle
20	chr14:71965200-71966000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:71965200-71966200	Enhancers	Fetal Heart	heart
22	chr14:71965200-71988000	Weak transcription	HSMM	muscle
23	chr14:71965400-71966200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:71965400-71967000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:71965400-71969800	Weak transcription	Brain Anterior Caudate	brain
26	chr14:71965400-71978600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:71965400-71981600	Weak transcription	Brain Angular Gyrus	brain
28	chr14:71965600-71966000	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:71965600-71966600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:71965600-71969200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:71965600-71969600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr14:71965600-71979600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links