Variant report

Variant	rs74060360
Chromosome Location	chr14:71955617-71955618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SIPA1L1-2	chr14:71954578-71956420	NONHSAT037641

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55763740	1.00[AMR][1000 genomes]
rs55898000	1.00[AMR][1000 genomes]
rs56373366	1.00[AMR][1000 genomes]
rs59476175	1.00[AMR][1000 genomes]
rs59553790	1.00[AMR][1000 genomes]
rs60615402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61336865	1.00[AMR][1000 genomes]
rs74060342	1.00[AMR][1000 genomes]
rs74060343	1.00[AMR][1000 genomes]
rs74060348	1.00[AMR][1000 genomes]
rs74060350	1.00[AMR][1000 genomes]
rs74060357	1.00[AMR][1000 genomes]
rs74060363	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71929200-71964200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr14:71935400-71980400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:71939000-71959800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:71939200-71955800	Weak transcription	NHLF	lung
5	chr14:71942000-71964200	Weak transcription	Hela-S3	cervix
6	chr14:71945800-71956200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:71945800-71956400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:71946000-71959800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:71946000-71963200	Weak transcription	Dnd41	blood
10	chr14:71946000-71995600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:71947000-71964600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:71948200-71958600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:71949200-71958600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:71950400-71958800	Weak transcription	Fetal Kidney	kidney
15	chr14:71950600-71958000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:71950800-71958200	Weak transcription	Ovary	ovary
17	chr14:71950800-71958600	Weak transcription	Lung	lung
18	chr14:71951000-71956200	Enhancers	Fetal Lung	lung
19	chr14:71951800-71955800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr14:71952200-71955800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:71952200-71962600	Weak transcription	Primary B cells from cord blood	blood
22	chr14:71953800-71956200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:71953800-71956200	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:71953800-71956200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:71953800-71956200	Enhancers	Rectal Smooth Muscle	rectum
26	chr14:71953800-71956200	Enhancers	Stomach Mucosa	stomach
27	chr14:71953800-71956800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:71954000-71956000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:71954000-71956200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:71954000-71956200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr14:71954000-71956200	Enhancers	Fetal Heart	heart
32	chr14:71954000-71956800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr14:71954200-71956000	Enhancers	Colon Smooth Muscle	Colon
34	chr14:71954200-71956200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:71954200-71956200	Enhancers	Brain Hippocampus Middle	brain
36	chr14:71954200-71956200	Enhancers	Fetal Stomach	stomach
37	chr14:71954200-71956800	Enhancers	Brain Substantia Nigra	brain
38	chr14:71954200-71959800	Weak transcription	Right Atrium	heart
39	chr14:71954400-71956200	Enhancers	NH-A	brain
40	chr14:71954400-71957200	Enhancers	NHDF-Ad	bronchial
41	chr14:71954400-71958600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:71954400-71960400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr14:71954400-71978200	Weak transcription	Primary T cells from cord blood	blood
44	chr14:71954600-71956000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr14:71954600-71956200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr14:71954600-71956200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:71954800-71955800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr14:71954800-71955800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:71954800-71956800	Enhancers	Fetal Intestine Small	intestine
50	chr14:71954800-71958200	Weak transcription	Spleen	Spleen

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