Variant report

Variant	rs61336865
Chromosome Location	chr14:71831931-71831932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71787369..71788975-chr14:71829951..71832025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55763740	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55898000	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56373366	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59476175	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59553790	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60615402	1.00[AMR][1000 genomes]
rs74060325	1.00[AMR][1000 genomes]
rs74060342	1.00[AMR][1000 genomes]
rs74060343	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060348	1.00[AMR][1000 genomes]
rs74060350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060357	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060360	1.00[AMR][1000 genomes]
rs74060363	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71806600-71838400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:71808800-71838600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:71812200-71838800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:71820000-71833600	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:71820200-71838600	Weak transcription	Hela-S3	cervix
6	chr14:71820600-71838800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:71827200-71837400	Weak transcription	Small Intestine	intestine
8	chr14:71827800-71832800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:71828200-71832200	Enhancers	Adipose Nuclei	Adipose
10	chr14:71828400-71832200	Enhancers	Primary B cells from cord blood	blood
11	chr14:71828600-71838200	Weak transcription	Esophagus	oesophagus
12	chr14:71828800-71832200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr14:71829000-71832200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:71829000-71833200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:71829000-71833200	Enhancers	K562	blood
16	chr14:71829400-71832400	Enhancers	NHDF-Ad	bronchial
17	chr14:71829400-71832800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr14:71829600-71832400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:71829600-71832600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:71829800-71832600	Enhancers	Fetal Stomach	stomach
21	chr14:71830000-71832000	Enhancers	Brain Substantia Nigra	brain
22	chr14:71830000-71833600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:71830000-71838200	Weak transcription	Fetal Intestine Small	intestine
24	chr14:71830400-71832200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:71830400-71832200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:71830400-71832200	Enhancers	Ovary	ovary
27	chr14:71830600-71838600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:71830600-71838600	Weak transcription	Brain Angular Gyrus	brain
29	chr14:71830800-71832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:71830800-71833200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:71831200-71832000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:71831200-71832000	Enhancers	Colon Smooth Muscle	Colon
33	chr14:71831200-71832000	Weak transcription	GM12878-XiMat	blood
34	chr14:71831200-71833200	Enhancers	Fetal Heart	heart
35	chr14:71831200-71837200	Weak transcription	Stomach Mucosa	stomach
36	chr14:71831200-71838600	Weak transcription	HSMM	muscle
37	chr14:71831200-71838800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr14:71831400-71832200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:71831400-71832200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:71831400-71832200	Enhancers	Stomach Smooth Muscle	stomach
41	chr14:71831400-71832400	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr14:71831400-71837400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr14:71831400-71838200	Weak transcription	Osteobl	bone
44	chr14:71831400-71838800	Weak transcription	HSMMtube	muscle
45	chr14:71831600-71832000	Weak transcription	NHLF	lung
46	chr14:71831600-71838400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr14:71831600-71838800	Weak transcription	Fetal Lung	lung
48	chr14:71831800-71832200	Enhancers	Lung	lung
49	chr14:71831800-71832400	Enhancers	NH-A	brain
50	chr14:71831800-71832400	Enhancers	NHEK	skin

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