Variant report

Variant	rs74060385
Chromosome Location	chr14:72088065-72088066
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55647033	1.00[AMR][1000 genomes]
rs55843519	1.00[AMR][1000 genomes]
rs55893880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56135446	1.00[AMR][1000 genomes]
rs56335120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56861516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57476769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58376035	1.00[AMR][1000 genomes]
rs58529740	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59405734	1.00[AMR][1000 genomes]
rs59476175	0.82[AFR][1000 genomes]
rs59553790	0.82[AFR][1000 genomes]
rs60239886	1.00[AMR][1000 genomes]
rs60600157	1.00[AMR][1000 genomes]
rs74060357	0.82[AFR][1000 genomes]
rs74060363	0.82[AFR][1000 genomes]
rs74060369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060386	1.00[AMR][1000 genomes]
rs74060387	1.00[AMR][1000 genomes]
rs74060390	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72053400-72098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:72059000-72098600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:72065800-72089600	Weak transcription	HSMMtube	muscle
4	chr14:72072600-72090600	Weak transcription	Fetal Intestine Large	intestine
5	chr14:72072600-72103600	Weak transcription	Left Ventricle	heart
6	chr14:72073200-72090600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:72073200-72099200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:72073200-72137800	Weak transcription	Esophagus	oesophagus
9	chr14:72073400-72090600	Weak transcription	Pancreas	Pancrea
10	chr14:72073400-72093600	Weak transcription	Gastric	stomach
11	chr14:72073400-72111000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:72074000-72089800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:72074000-72090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:72074000-72090600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:72075200-72092600	Weak transcription	Brain Substantia Nigra	brain
16	chr14:72075200-72093800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:72075200-72106800	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:72077800-72088600	Weak transcription	Brain Germinal Matrix	brain
19	chr14:72077800-72089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:72077800-72092800	Weak transcription	Fetal Lung	lung
21	chr14:72077800-72096800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:72078000-72090600	Weak transcription	Adipose Nuclei	Adipose
23	chr14:72078000-72090600	Weak transcription	Brain Anterior Caudate	brain
24	chr14:72078200-72095800	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:72078600-72100000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:72080200-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:72080600-72090600	Weak transcription	Ovary	ovary
28	chr14:72081600-72090600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr14:72082600-72125000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:72083000-72111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:72083400-72101600	Weak transcription	Fetal Stomach	stomach
32	chr14:72083600-72099000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr14:72083600-72118000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:72083600-72128200	Weak transcription	Spleen	Spleen
35	chr14:72083800-72088400	Strong transcription	Primary B cells from cord blood	blood
36	chr14:72083800-72099000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr14:72083800-72099000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr14:72083800-72100400	Weak transcription	Fetal Thymus	thymus
39	chr14:72083800-72105200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:72083800-72109800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:72084000-72090800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr14:72084000-72111800	Weak transcription	Thymus	Thymus
43	chr14:72084200-72090200	Weak transcription	Fetal Heart	heart
44	chr14:72084400-72089600	Weak transcription	HepG2	liver
45	chr14:72084400-72090600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:72084600-72101400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr14:72084800-72090600	Weak transcription	Lung	lung
48	chr14:72085000-72090800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:72085400-72088200	Strong transcription	Primary T cells from cord blood	blood
50	chr14:72085400-72088400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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