Variant report

Variant	rs60294511
Chromosome Location	chr1:227012676-227012677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1341281	1.00[EUR][1000 genomes]
rs1341282	1.00[EUR][1000 genomes]
rs16846590	1.00[EUR][1000 genomes]
rs4520384	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57594469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58698650	1.00[EUR][1000 genomes]
rs58973334	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59683545	1.00[EUR][1000 genomes]
rs59692841	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60232264	0.81[AFR][1000 genomes]
rs60560949	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61103575	1.00[EUR][1000 genomes]
rs61185121	1.00[EUR][1000 genomes]
rs6426539	1.00[EUR][1000 genomes]
rs6426540	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6671059	1.00[EUR][1000 genomes]
rs6675452	1.00[EUR][1000 genomes]
rs6677908	1.00[EUR][1000 genomes]
rs6678839	1.00[EUR][1000 genomes]
rs6678940	1.00[EUR][1000 genomes]
rs708764	0.86[AFR][1000 genomes]
rs708765	0.86[AFR][1000 genomes]
rs74139805	1.00[EUR][1000 genomes]
rs74139806	1.00[EUR][1000 genomes]
rs7522645	1.00[EUR][1000 genomes]
rs7523790	1.00[EUR][1000 genomes]
rs7525819	1.00[EUR][1000 genomes]
rs7555672	1.00[EUR][1000 genomes]
rs835660	0.86[AFR][1000 genomes]

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227003400-227015000	Weak transcription	Thymus	Thymus
2	chr1:227009400-227015200	Weak transcription	NHEK	skin
3	chr1:227009600-227014800	Weak transcription	Fetal Kidney	kidney
4	chr1:227009800-227012800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:227009800-227014600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:227009800-227015200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:227009800-227015200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:227009800-227015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:227009800-227015600	Weak transcription	Osteobl	bone
10	chr1:227010000-227014600	Weak transcription	Adipose Nuclei	Adipose
11	chr1:227010000-227014600	Weak transcription	Colonic Mucosa	Colon
12	chr1:227010000-227014800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:227010000-227015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:227010000-227015200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:227010000-227015200	Weak transcription	Esophagus	oesophagus
16	chr1:227010000-227015200	Weak transcription	Right Ventricle	heart
17	chr1:227010000-227015200	Weak transcription	HSMM	muscle
18	chr1:227010000-227015200	Weak transcription	HUVEC	blood vessel
19	chr1:227010000-227015600	Weak transcription	Left Ventricle	heart
20	chr1:227010200-227013200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:227010200-227013600	Weak transcription	Placenta	Placenta
22	chr1:227010200-227014800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr1:227010200-227014800	Weak transcription	NHDF-Ad	bronchial
24	chr1:227010200-227015200	Weak transcription	Fetal Lung	lung
25	chr1:227010200-227015200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:227010200-227015200	Weak transcription	Right Atrium	heart
27	chr1:227010600-227013200	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:227010600-227014800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:227010800-227013000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:227011000-227013800	Enhancers	Primary T cells from cord blood	blood
31	chr1:227011000-227014600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:227011200-227015200	Enhancers	Brain Substantia Nigra	brain
33	chr1:227011400-227013800	Enhancers	Primary B cells from peripheral blood	blood
34	chr1:227011400-227013800	Enhancers	Fetal Thymus	thymus
35	chr1:227011400-227015200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr1:227011400-227015400	Enhancers	Brain Cingulate Gyrus	brain
37	chr1:227011400-227016000	Enhancers	Brain Hippocampus Middle	brain
38	chr1:227011600-227013200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr1:227011600-227013400	Weak transcription	Fetal Stomach	stomach
40	chr1:227011600-227014600	Weak transcription	Colon Smooth Muscle	Colon
41	chr1:227011600-227015400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr1:227011600-227015600	Enhancers	Brain Anterior Caudate	brain
43	chr1:227011800-227013800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:227011800-227015000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr1:227011800-227015200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:227012000-227013600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:227012000-227013800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:227012000-227013800	Enhancers	Brain Angular Gyrus	brain
49	chr1:227012000-227014600	Weak transcription	Spleen	Spleen
50	chr1:227012400-227013200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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