Variant report

Variant	rs74139805
Chromosome Location	chr1:227000249-227000250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226998600..227001296-chr1:227008651..227010463,2	K562	blood:
2	chr1:226996423..226998439-chr1:226999646..227002878,3	MCF-7	breast:
3	chr1:226995906..226998564-chr1:226999245..227000818,2	K562	blood:
4	chr1:226924516..226928386-chr1:226999623..227003731,5	MCF-7	breast:
5	chr1:226994914..226997823-chr1:226999352..227001861,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143772	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1341281	1.00[EUR][1000 genomes]
rs1341282	1.00[EUR][1000 genomes]
rs16846590	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4520384	1.00[EUR][1000 genomes]
rs57594469	1.00[EUR][1000 genomes]
rs58698650	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58973334	1.00[EUR][1000 genomes]
rs59683545	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59692841	1.00[EUR][1000 genomes]
rs60294511	1.00[EUR][1000 genomes]
rs60560949	1.00[EUR][1000 genomes]
rs60602411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61103575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185121	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61674281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6426539	1.00[EUR][1000 genomes]
rs6426540	1.00[EUR][1000 genomes]
rs6671059	1.00[EUR][1000 genomes]
rs6675452	1.00[EUR][1000 genomes]
rs6677908	1.00[EUR][1000 genomes]
rs6678839	1.00[EUR][1000 genomes]
rs6678940	1.00[EUR][1000 genomes]
rs74139806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139812	1.00[AMR][1000 genomes]
rs74139837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139840	1.00[AMR][1000 genomes]
rs74139842	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522645	1.00[EUR][1000 genomes]
rs7523790	1.00[EUR][1000 genomes]
rs7525819	1.00[EUR][1000 genomes]
rs7555672	1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
2	chr1:226989400-227002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:226992800-227003200	Weak transcription	Lung	lung
4	chr1:226993600-227001400	Weak transcription	Thymus	Thymus
5	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:226995000-227003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:226997600-227001600	Weak transcription	Brain Angular Gyrus	brain
9	chr1:226997800-227001600	Weak transcription	Brain Anterior Caudate	brain
10	chr1:226998200-227001400	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:226998200-227002000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:226998200-227002400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:226998200-227002400	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:226998400-227001600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:226998400-227001600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:226998400-227003200	Weak transcription	Pancreas	Pancrea
17	chr1:226998600-227001400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:226998600-227001400	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:226998600-227001400	Weak transcription	Fetal Thymus	thymus
20	chr1:226998600-227001400	Weak transcription	HSMM	muscle
21	chr1:226998600-227001800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr1:226998600-227002000	Weak transcription	NH-A	brain
23	chr1:226998600-227002800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:226998800-227001400	Weak transcription	HSMMtube	muscle
25	chr1:226998800-227001600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:226998800-227002000	Weak transcription	Placenta	Placenta
27	chr1:226998800-227002400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:226999000-227001600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:226999000-227002400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:226999200-227001400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:226999200-227001400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:226999200-227001400	Weak transcription	Brain Substantia Nigra	brain
33	chr1:226999200-227002600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:226999800-227001600	Weak transcription	NHDF-Ad	bronchial

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