Variant report

Variant	rs74139806
Chromosome Location	chr1:227002881-227002882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226998001..226999981-chr1:227000720..227003139,2	MCF-7	breast:
2	chr1:226997587..227000105-chr1:227001744..227003689,2	K562	blood:
3	chr1:226924516..226928386-chr1:226999623..227003731,5	MCF-7	breast:
4	chr1:226898681..226901320-chr1:227002412..227005271,2	MCF-7	breast:
5	chr1:227001349..227004344-chr1:227005535..227008816,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143772	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1341281	1.00[EUR][1000 genomes]
rs1341282	1.00[EUR][1000 genomes]
rs16846590	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4520384	1.00[EUR][1000 genomes]
rs57594469	1.00[EUR][1000 genomes]
rs58698650	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58973334	1.00[EUR][1000 genomes]
rs59683545	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59692841	1.00[EUR][1000 genomes]
rs60294511	1.00[EUR][1000 genomes]
rs60560949	1.00[EUR][1000 genomes]
rs60602411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61103575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185121	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61674281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6426539	1.00[EUR][1000 genomes]
rs6426540	1.00[EUR][1000 genomes]
rs6671059	1.00[EUR][1000 genomes]
rs6675452	1.00[EUR][1000 genomes]
rs6677908	1.00[EUR][1000 genomes]
rs6678839	1.00[EUR][1000 genomes]
rs6678940	1.00[EUR][1000 genomes]
rs74139805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139812	1.00[AMR][1000 genomes]
rs74139837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139840	1.00[AMR][1000 genomes]
rs74139842	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522645	1.00[EUR][1000 genomes]
rs7523790	1.00[EUR][1000 genomes]
rs7525819	1.00[EUR][1000 genomes]
rs7555672	1.00[EUR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226992800-227003200	Weak transcription	Lung	lung
2	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:226995000-227003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:226998400-227003200	Weak transcription	Pancreas	Pancrea
6	chr1:227000800-227004200	Enhancers	Fetal Intestine Large	intestine
7	chr1:227001400-227003200	Enhancers	Right Atrium	heart
8	chr1:227001400-227003400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:227001400-227003400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:227001400-227003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:227001400-227003400	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:227001400-227003400	Enhancers	Brain Hippocampus Middle	brain
13	chr1:227001400-227003400	Enhancers	Brain Substantia Nigra	brain
14	chr1:227001400-227003400	Enhancers	Left Ventricle	heart
15	chr1:227001400-227003400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr1:227001400-227003400	Enhancers	Thymus	Thymus
17	chr1:227001400-227003400	Enhancers	HSMM	muscle
18	chr1:227001400-227003400	Enhancers	HSMMtube	muscle
19	chr1:227001400-227003600	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:227001400-227003600	Enhancers	Fetal Muscle Leg	muscle
21	chr1:227001400-227003600	Enhancers	Psoas Muscle	Psoas
22	chr1:227001400-227004000	Enhancers	Adipose Nuclei	Adipose
23	chr1:227001400-227004000	Enhancers	Fetal Thymus	thymus
24	chr1:227001400-227004000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr1:227001400-227004200	Enhancers	Fetal Intestine Small	intestine
26	chr1:227001400-227005000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:227001400-227005000	Enhancers	HMEC	breast
28	chr1:227001400-227005200	Enhancers	NHLF	lung
29	chr1:227001600-227003400	Enhancers	Brain Angular Gyrus	brain
30	chr1:227001600-227003400	Enhancers	Rectal Smooth Muscle	rectum
31	chr1:227001600-227003600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr1:227001600-227004000	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr1:227001600-227004200	Enhancers	Brain Anterior Caudate	brain
34	chr1:227001600-227005200	Enhancers	NHDF-Ad	bronchial
35	chr1:227001800-227004800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr1:227001800-227005200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:227001800-227005200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr1:227002000-227003200	Enhancers	Ovary	ovary
39	chr1:227002000-227003400	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr1:227002000-227003400	Enhancers	Right Ventricle	heart
41	chr1:227002000-227003600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:227002000-227003600	Enhancers	Fetal Muscle Trunk	muscle
43	chr1:227002000-227003600	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr1:227002000-227003800	Enhancers	Fetal Stomach	stomach
45	chr1:227002000-227004800	Enhancers	Placenta	Placenta
46	chr1:227002000-227005000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:227002200-227003200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:227002200-227003200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:227002200-227003400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:227002200-227005200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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