Variant report

Variant	rs61103575
Chromosome Location	chr1:227003640-227003641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226997587..227000105-chr1:227001744..227003689,2	K562	blood:
2	chr1:226924516..226928386-chr1:226999623..227003731,5	MCF-7	breast:
3	chr1:226898681..226901320-chr1:227002412..227005271,2	MCF-7	breast:
4	chr1:227001349..227004344-chr1:227005535..227008816,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143772	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1341281	1.00[EUR][1000 genomes]
rs1341282	1.00[EUR][1000 genomes]
rs16846590	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4520384	1.00[EUR][1000 genomes]
rs57594469	1.00[EUR][1000 genomes]
rs58698650	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58973334	1.00[EUR][1000 genomes]
rs59683545	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59692841	1.00[EUR][1000 genomes]
rs60294511	1.00[EUR][1000 genomes]
rs60560949	1.00[EUR][1000 genomes]
rs60602411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61185121	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61674281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6426539	1.00[EUR][1000 genomes]
rs6426540	1.00[EUR][1000 genomes]
rs6671059	1.00[EUR][1000 genomes]
rs6675452	1.00[EUR][1000 genomes]
rs6677908	1.00[EUR][1000 genomes]
rs6678839	1.00[EUR][1000 genomes]
rs6678940	1.00[EUR][1000 genomes]
rs74139805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139812	1.00[AMR][1000 genomes]
rs74139837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139840	1.00[AMR][1000 genomes]
rs74139842	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522645	1.00[EUR][1000 genomes]
rs7523790	1.00[EUR][1000 genomes]
rs7525819	1.00[EUR][1000 genomes]
rs7555672	1.00[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:227000800-227004200	Enhancers	Fetal Intestine Large	intestine
4	chr1:227001400-227004000	Enhancers	Adipose Nuclei	Adipose
5	chr1:227001400-227004000	Enhancers	Fetal Thymus	thymus
6	chr1:227001400-227004000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:227001400-227004200	Enhancers	Fetal Intestine Small	intestine
8	chr1:227001400-227005000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:227001400-227005000	Enhancers	HMEC	breast
10	chr1:227001400-227005200	Enhancers	NHLF	lung
11	chr1:227001600-227004000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr1:227001600-227004200	Enhancers	Brain Anterior Caudate	brain
13	chr1:227001600-227005200	Enhancers	NHDF-Ad	bronchial
14	chr1:227001800-227004800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:227001800-227005200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:227001800-227005200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:227002000-227003800	Enhancers	Fetal Stomach	stomach
18	chr1:227002000-227004800	Enhancers	Placenta	Placenta
19	chr1:227002000-227005000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:227002200-227005200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:227002600-227004200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:227002600-227004200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr1:227002800-227004000	Enhancers	Esophagus	oesophagus
24	chr1:227003000-227004200	Enhancers	A549	lung
25	chr1:227003200-227004200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:227003200-227004200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:227003200-227005400	Enhancers	HUVEC	blood vessel
28	chr1:227003200-227008000	Weak transcription	Right Atrium	heart
29	chr1:227003200-227008200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:227003400-227004200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:227003400-227004600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:227003400-227004800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:227003400-227004800	Enhancers	Hela-S3	cervix
34	chr1:227003400-227005000	Enhancers	NHEK	skin
35	chr1:227003400-227005200	Enhancers	NH-A	brain
36	chr1:227003400-227007600	Weak transcription	Left Ventricle	heart
37	chr1:227003400-227007800	Weak transcription	Brain Substantia Nigra	brain
38	chr1:227003400-227008000	Weak transcription	Brain Hippocampus Middle	brain
39	chr1:227003400-227008200	Weak transcription	Colon Smooth Muscle	Colon
40	chr1:227003400-227008200	Weak transcription	Fetal Lung	lung
41	chr1:227003400-227008200	Weak transcription	Spleen	Spleen
42	chr1:227003400-227008400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:227003400-227008400	Weak transcription	Osteobl	bone
44	chr1:227003400-227008600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:227003400-227008600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:227003400-227008600	Weak transcription	Brain Angular Gyrus	brain
47	chr1:227003400-227008600	Weak transcription	HSMM	muscle
48	chr1:227003400-227008600	Weak transcription	HSMMtube	muscle
49	chr1:227003400-227008800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr1:227003400-227009200	Weak transcription	Brain Inferior Temporal Lobe	brain

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