Variant report

Variant	rs60321177
Chromosome Location	chr10:99311398-99311399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99307089..99309387-chr10:99309451..99312013,2	MCF-7	breast:
2	chr10:99203371..99205386-chr10:99311046..99312878,2	K562	blood:
3	chr10:99296840..99298523-chr10:99309435..99312063,2	MCF-7	breast:
4	chr10:99303622..99306407-chr10:99309864..99312001,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57077758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57577159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6584134	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089538	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330801	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332712	0.86[AFR][1000 genomes]
rs73332734	1.00[EUR][1000 genomes]
rs73332742	1.00[EUR][1000 genomes]
rs73332750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99304200-99313400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:99306400-99311400	Enhancers	Psoas Muscle	Psoas
6	chr10:99306600-99311400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:99307000-99311400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:99307200-99313600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:99307600-99311400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:99307600-99311400	Enhancers	HMEC	breast
11	chr10:99308000-99313200	Weak transcription	HUVEC	blood vessel
12	chr10:99308200-99313200	Weak transcription	NHLF	lung
13	chr10:99308600-99311400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:99308600-99311400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:99308600-99311600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:99308600-99311800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:99308800-99311400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:99308800-99311400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:99309200-99311400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:99309400-99313200	Weak transcription	A549	lung
21	chr10:99309600-99313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:99309800-99313000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:99309800-99313400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:99309800-99316200	Weak transcription	Liver	Liver
25	chr10:99310000-99311600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:99310000-99313200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:99310000-99313200	Weak transcription	Adipose Nuclei	Adipose
28	chr10:99310000-99313200	Weak transcription	Fetal Stomach	stomach
29	chr10:99310000-99313200	Weak transcription	NH-A	brain
30	chr10:99310200-99313200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:99310200-99313400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:99310400-99311400	Enhancers	K562	blood
33	chr10:99310400-99311800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:99310400-99312200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:99310400-99327600	Weak transcription	Lung	lung
36	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
37	chr10:99310600-99311600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr10:99310600-99313000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:99310600-99313200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:99310600-99313200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:99310600-99313200	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:99310600-99313200	Weak transcription	Esophagus	oesophagus
43	chr10:99310600-99313200	Weak transcription	GM12878-XiMat	blood
44	chr10:99310600-99313200	Weak transcription	HepG2	liver
45	chr10:99310600-99313400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:99310600-99313400	Weak transcription	Right Atrium	heart
47	chr10:99310800-99312800	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:99310800-99312800	Weak transcription	NHEK	skin
49	chr10:99310800-99313200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:99310800-99313200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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