Variant report

Variant	rs73332710
Chromosome Location	chr10:99309749-99309750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99258572..99260331-chr10:99308724..99311083,3	MCF-7	breast:
2	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
3	chr10:99307089..99309387-chr10:99309451..99312013,2	MCF-7	breast:
4	chr10:99275110..99276850-chr10:99307857..99310053,2	MCF-7	breast:
5	chr10:99256850..99259396-chr10:99308811..99310601,2	MCF-7	breast:
6	chr10:99296840..99298523-chr10:99309435..99312063,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57077758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57577159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60321177	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6584134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089538	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330801	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332734	1.00[EUR][1000 genomes]
rs73332742	1.00[EUR][1000 genomes]
rs73332750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99304200-99313400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:99305600-99309800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:99306000-99311000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:99306200-99310000	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:99306200-99310600	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:99306400-99310800	Enhancers	Brain Substantia Nigra	brain
10	chr10:99306400-99311000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr10:99306400-99311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:99306400-99311400	Enhancers	Psoas Muscle	Psoas
13	chr10:99306600-99310800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:99306600-99311400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:99306800-99310400	Enhancers	Right Ventricle	heart
16	chr10:99306800-99310600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:99306800-99310600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:99306800-99310800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:99307000-99309800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:99307000-99311400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:99307200-99310000	Weak transcription	Fetal Kidney	kidney
22	chr10:99307200-99310000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:99307200-99310000	Weak transcription	Spleen	Spleen
24	chr10:99307200-99313600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:99307400-99310000	Enhancers	NH-A	brain
26	chr10:99307600-99310800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:99307600-99311400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:99307600-99311400	Enhancers	HMEC	breast
29	chr10:99307800-99309800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:99307800-99310400	Enhancers	Brain Angular Gyrus	brain
31	chr10:99308000-99310800	Enhancers	Left Ventricle	heart
32	chr10:99308000-99313200	Weak transcription	HUVEC	blood vessel
33	chr10:99308200-99310400	Weak transcription	Osteobl	bone
34	chr10:99308200-99313200	Weak transcription	NHLF	lung
35	chr10:99308600-99310800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:99308600-99310800	Enhancers	Brain Anterior Caudate	brain
37	chr10:99308600-99311000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:99308600-99311400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:99308600-99311400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:99308600-99311600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:99308600-99311800	Enhancers	Placenta Amnion	Placenta Amnion
42	chr10:99308800-99309800	Enhancers	Stomach Smooth Muscle	stomach
43	chr10:99308800-99310000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:99308800-99310000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:99308800-99310000	Enhancers	Fetal Thymus	thymus
46	chr10:99308800-99310600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:99308800-99310600	Enhancers	HepG2	liver
48	chr10:99308800-99310800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:99308800-99311000	Enhancers	Placenta	Placenta
50	chr10:99308800-99311400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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