Variant report

Variant	rs73330801
Chromosome Location	chr10:99306963-99306964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99255761..99258218-chr10:99306296..99308744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57077758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57577159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60321177	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6584134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332710	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332734	1.00[EUR][1000 genomes]
rs73332742	1.00[EUR][1000 genomes]
rs73332750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:99302200-99308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99302600-99308800	Weak transcription	Fetal Thymus	thymus
4	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
5	chr10:99303200-99308400	Weak transcription	HepG2	liver
6	chr10:99303200-99308800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:99303200-99309000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
9	chr10:99303400-99307800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:99303400-99308000	Enhancers	HUVEC	blood vessel
11	chr10:99303400-99308800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:99303400-99309600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:99303600-99308800	Weak transcription	Placenta	Placenta
14	chr10:99303600-99308800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:99303600-99309000	Weak transcription	Fetal Heart	heart
16	chr10:99303600-99309400	Weak transcription	Fetal Lung	lung
17	chr10:99303800-99307600	Weak transcription	Osteobl	bone
18	chr10:99303800-99307800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:99303800-99308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:99303800-99308600	Weak transcription	Brain Anterior Caudate	brain
21	chr10:99303800-99308800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:99303800-99309000	Weak transcription	A549	lung
23	chr10:99303800-99309400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:99303800-99309400	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:99303800-99327800	Weak transcription	Ovary	ovary
26	chr10:99304000-99308600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:99304000-99308600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:99304200-99307000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:99304200-99307000	Weak transcription	NHLF	lung
30	chr10:99304200-99307600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:99304200-99307600	Weak transcription	HMEC	breast
32	chr10:99304200-99308000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:99304200-99309200	Weak transcription	NHDF-Ad	bronchial
34	chr10:99304200-99313400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:99304400-99307000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:99304400-99307600	Weak transcription	NHEK	skin
37	chr10:99304400-99308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:99304400-99308800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:99304800-99307000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:99305400-99307200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:99305600-99309800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:99305800-99307000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:99305800-99307000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:99305800-99309200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:99306000-99307000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:99306000-99308200	Enhancers	HSMM	muscle
47	chr10:99306000-99309400	Weak transcription	Lung	lung
48	chr10:99306000-99311000	Enhancers	Fetal Muscle Leg	muscle
49	chr10:99306200-99307200	Enhancers	HSMMtube	muscle
50	chr10:99306200-99307400	Enhancers	Muscle Satellite Cultured Cells	--

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