Variant report

Variant	rs73332742
Chromosome Location	chr10:99332831-99332832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
2	chr10:99332396..99334042-chr10:99392626..99394470,2	K562	blood:
3	chr10:99222708..99225169-chr10:99331581..99333239,2	MCF-7	breast:
4	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
5	chr10:99256533..99260506-chr10:99329939..99335950,10	MCF-7	breast:
6	chr10:99205743..99208350-chr10:99330121..99333769,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171307	Chromatin interaction
ENSG00000171160	Chromatin interaction
ENSG00000241935	Chromatin interaction
ENSG00000249967	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57077758	1.00[EUR][1000 genomes]
rs57577159	1.00[EUR][1000 genomes]
rs60321177	1.00[EUR][1000 genomes]
rs6584134	1.00[EUR][1000 genomes]
rs7089538	1.00[EUR][1000 genomes]
rs73330780	1.00[EUR][1000 genomes]
rs73330801	1.00[EUR][1000 genomes]
rs73332710	1.00[EUR][1000 genomes]
rs73332734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99321200-99334600	Weak transcription	HepG2	liver
2	chr10:99322000-99333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:99325600-99334600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:99326000-99334200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:99326400-99334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:99327000-99334600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:99327200-99334600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:99327800-99334400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:99329200-99334000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:99329600-99334600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:99329800-99333000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:99329800-99333000	Enhancers	Esophagus	oesophagus
13	chr10:99329800-99336000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr10:99330000-99335400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:99330800-99334200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:99330800-99334400	Weak transcription	NHLF	lung
17	chr10:99330800-99334600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:99330800-99335000	Weak transcription	Ovary	ovary
19	chr10:99330800-99335400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr10:99330800-99336200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:99330800-99336200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:99330800-99336200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:99331000-99337200	Enhancers	Fetal Heart	heart
24	chr10:99331200-99333000	Enhancers	Placenta	Placenta
25	chr10:99331200-99334400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:99331200-99334400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr10:99331400-99333200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:99331400-99336000	Enhancers	Fetal Muscle Leg	muscle
29	chr10:99331400-99336200	Enhancers	Hela-S3	cervix
30	chr10:99331600-99333400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:99331800-99334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:99331800-99334400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:99331800-99334800	Enhancers	Stomach Smooth Muscle	stomach
34	chr10:99332000-99333000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:99332000-99333000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:99332000-99333000	Flanking Active TSS	Fetal Muscle Trunk	muscle
37	chr10:99332000-99335400	Enhancers	HMEC	breast
38	chr10:99332000-99335600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:99332000-99335800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:99332200-99333000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:99332200-99333000	Enhancers	NHDF-Ad	bronchial
42	chr10:99332200-99333200	Flanking Active TSS	Right Ventricle	heart
43	chr10:99332200-99333400	Enhancers	Osteobl	bone
44	chr10:99332200-99333600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:99332200-99333800	Active TSS	Psoas Muscle	Psoas
46	chr10:99332200-99334600	Weak transcription	Fetal Intestine Large	intestine
47	chr10:99332200-99335000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:99332200-99336200	Enhancers	NHEK	skin
49	chr10:99332400-99333200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:99332400-99333200	Flanking Active TSS	HSMMtube	muscle

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