Variant report

Variant	rs6584134
Chromosome Location	chr10:99313205-99313206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99312057..99313792-chr10:99332151..99333751,2	MCF-7	breast:
2	chr10:99301268..99303688-chr10:99312791..99314821,3	MCF-7	breast:
3	chr10:99223115..99224039-chr10:99312943..99313970,3	MCF-7	breast:
4	chr10:99293924..99295180-chr10:99312973..99313927,7	MCF-7	breast:
5	chr10:99312973..99313822-chr10:99372040..99372690,2	MCF-7	breast:
6	chr10:99311940..99314624-chr10:99329998..99332096,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165887	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57077758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57577159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60321177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332712	0.84[AFR][1000 genomes]
rs73332734	1.00[EUR][1000 genomes]
rs73332742	1.00[EUR][1000 genomes]
rs73332750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99304200-99313400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:99307200-99313600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:99309800-99313400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:99309800-99316200	Weak transcription	Liver	Liver
8	chr10:99310200-99313400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:99310400-99327600	Weak transcription	Lung	lung
10	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
11	chr10:99310600-99313400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:99310600-99313400	Weak transcription	Right Atrium	heart
13	chr10:99310800-99313400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:99310800-99313400	Weak transcription	HSMMtube	muscle
15	chr10:99310800-99313600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:99310800-99313600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
21	chr10:99311000-99313400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:99311000-99313600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:99311400-99313400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:99311400-99313400	Weak transcription	Psoas Muscle	Psoas
25	chr10:99311400-99313400	Weak transcription	K562	blood
26	chr10:99311400-99313600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:99311400-99313600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:99311400-99313600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
30	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:99311600-99313400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:99311600-99313400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:99312200-99314000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:99312800-99313800	Enhancers	Brain Hippocampus Middle	brain
35	chr10:99312800-99313800	Enhancers	NHEK	skin
36	chr10:99312800-99314000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:99312800-99314200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:99313000-99313800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:99313000-99313800	Enhancers	Fetal Muscle Trunk	muscle
40	chr10:99313000-99313800	Enhancers	Stomach Smooth Muscle	stomach
41	chr10:99313000-99314000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr10:99313200-99313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:99313200-99313400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr10:99313200-99313400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:99313200-99313600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:99313200-99313600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr10:99313200-99313600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:99313200-99313600	Enhancers	Esophagus	oesophagus
49	chr10:99313200-99313600	Enhancers	Placenta Amnion	Placenta Amnion
50	chr10:99313200-99313800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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