Variant report

Variant	rs6036176
Chromosome Location	chr20:22668305-22668306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22666267..22668441-chr20:22670071..22672660,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1571249	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs1571251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2145059	0.81[EUR][1000 genomes]
rs2145060	0.81[EUR][1000 genomes]
rs2145061	0.81[EUR][1000 genomes]
rs2148920	0.80[EUR][1000 genomes]
rs2148921	0.80[EUR][1000 genomes]
rs2148922	0.80[EUR][1000 genomes]
rs2209796	0.91[EUR][1000 genomes]
rs2424456	0.81[EUR][1000 genomes]
rs2424457	0.81[EUR][1000 genomes]
rs2424458	0.81[EUR][1000 genomes]
rs2424459	0.87[EUR][1000 genomes]
rs4499503	0.87[EUR][1000 genomes]
rs4815134	0.81[EUR][1000 genomes]
rs6036169	0.81[EUR][1000 genomes]
rs6036172	0.86[EUR][1000 genomes]
rs6036175	0.91[EUR][1000 genomes]
rs6048241	0.86[EUR][1000 genomes]
rs6048245	0.87[EUR][1000 genomes]
rs6048247	0.90[EUR][1000 genomes]
rs6048249	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6048253	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6048254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075933	0.86[EUR][1000 genomes]
rs6075934	0.86[EUR][1000 genomes]
rs6082774	0.87[EUR][1000 genomes]
rs6082777	0.86[EUR][1000 genomes]
rs6082778	0.87[EUR][1000 genomes]
rs6082779	0.87[EUR][1000 genomes]
rs6082784	0.87[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs6082789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082790	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113758	0.80[EUR][1000 genomes]
rs6113762	0.86[EUR][1000 genomes]
rs6132537	0.87[EUR][1000 genomes]
rs6137721	0.87[EUR][1000 genomes]
rs6137726	0.81[EUR][1000 genomes]
rs6137727	0.81[EUR][1000 genomes]
rs7273357	0.87[EUR][1000 genomes]
rs73304706	0.86[EUR][1000 genomes]
rs73304707	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22660200-22669400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:22664800-22669400	Weak transcription	Gastric	stomach
3	chr20:22664800-22672600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr20:22665400-22671000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr20:22665600-22672400	Weak transcription	Ovary	ovary
6	chr20:22666000-22669800	Weak transcription	Adipose Nuclei	Adipose
7	chr20:22666000-22672400	Weak transcription	K562	blood
8	chr20:22666800-22669400	Weak transcription	Spleen	Spleen
9	chr20:22667200-22669000	Weak transcription	Lung	lung
10	chr20:22667200-22669800	Weak transcription	Stomach Mucosa	stomach
11	chr20:22667200-22669800	Weak transcription	A549	lung
12	chr20:22667200-22671800	Weak transcription	Placenta	Placenta
13	chr20:22667200-22671800	Weak transcription	Right Ventricle	heart
14	chr20:22667200-22672400	Weak transcription	HSMM	muscle
15	chr20:22667200-22672400	Weak transcription	HSMMtube	muscle
16	chr20:22667200-22672400	Weak transcription	HUVEC	blood vessel
17	chr20:22667200-22672600	Weak transcription	Right Atrium	heart
18	chr20:22667800-22669200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr20:22668200-22669200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links