Variant report

Variant	rs6113762
Chromosome Location	chr20:22653584-22653585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1203925	0.86[JPT][hapmap]
rs1203930	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs1203932	0.86[JPT][hapmap]
rs1203933	0.86[JPT][hapmap]
rs1203934	0.86[JPT][hapmap]
rs1543443	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571249	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1571251	0.87[CEU][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1571252	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2145059	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145060	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145061	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2180553	0.83[ASN][1000 genomes]
rs2209796	0.95[EUR][1000 genomes]
rs2424445	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2424447	0.91[ASN][1000 genomes]
rs2424448	0.91[ASN][1000 genomes]
rs2424451	0.96[ASN][1000 genomes]
rs2424454	0.89[EUR][1000 genomes]
rs2424456	0.92[EUR][1000 genomes]
rs2424457	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2424458	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2424459	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4499503	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4815134	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4815135	0.87[EUR][1000 genomes]
rs6036168	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6036169	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6036170	0.82[EUR][1000 genomes]
rs6036172	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036173	0.87[EUR][1000 genomes]
rs6036175	0.95[EUR][1000 genomes]
rs6036176	0.87[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs6048241	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048245	0.99[EUR][1000 genomes]
rs6048247	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6048249	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6048253	0.84[EUR][1000 genomes]
rs6048254	0.87[EUR][1000 genomes]
rs6075933	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075934	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082767	0.94[ASN][1000 genomes]
rs6082774	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6082777	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082778	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6082779	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6082784	1.00[CEU][hapmap];0.88[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs6082789	0.87[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs6082790	0.85[EUR][1000 genomes]
rs6113758	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6132537	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6137721	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7273357	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73304706	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304707	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs747912	0.83[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22645600-22664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22652200-22659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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