Variant report

Variant	rs2424457
Chromosome Location	chr20:22645049-22645050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1543443	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1571249	0.89[EUR][1000 genomes]
rs1571251	0.81[EUR][1000 genomes]
rs1571252	0.82[EUR][1000 genomes]
rs2145058	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2145059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145060	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145061	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2209796	0.90[EUR][1000 genomes]
rs2224316	0.81[ASN][1000 genomes]
rs2424444	0.81[ASN][1000 genomes]
rs2424445	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2424446	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424447	0.84[EUR][1000 genomes]
rs2424448	0.83[EUR][1000 genomes]
rs2424450	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424451	0.83[EUR][1000 genomes]
rs2424454	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2424456	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2424458	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424459	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4499503	0.90[EUR][1000 genomes]
rs4815129	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4815130	0.86[ASN][1000 genomes]
rs4815131	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815132	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4815135	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55803110	0.97[ASN][1000 genomes]
rs6036168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036169	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036170	0.83[EUR][1000 genomes]
rs6036172	0.92[EUR][1000 genomes]
rs6036173	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6036175	0.90[EUR][1000 genomes]
rs6036176	0.81[EUR][1000 genomes]
rs6048241	0.92[EUR][1000 genomes]
rs6048245	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048247	0.89[EUR][1000 genomes]
rs6048249	0.88[EUR][1000 genomes]
rs6048254	0.80[EUR][1000 genomes]
rs6075933	0.92[EUR][1000 genomes]
rs6075934	0.92[EUR][1000 genomes]
rs6082765	0.81[ASN][1000 genomes]
rs6082767	0.83[EUR][1000 genomes]
rs6082774	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082777	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6082778	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082779	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082784	0.90[EUR][1000 genomes]
rs6082789	0.81[EUR][1000 genomes]
rs6113758	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6113762	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6132536	0.97[ASN][1000 genomes]
rs6132537	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6137721	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7273357	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73304706	0.92[EUR][1000 genomes]
rs73304707	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs747911	0.81[ASN][1000 genomes]
rs754855	0.81[ASN][1000 genomes]
rs910956	0.81[ASN][1000 genomes]
rs910957	0.82[ASN][1000 genomes]
rs975525	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22643200-22645400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr20:22643200-22645600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr20:22643200-22646200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr20:22643400-22645200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr20:22643400-22645200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:22643400-22645200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:22643400-22645400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr20:22643400-22645800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr20:22644600-22645200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr20:22645000-22645600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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