Variant report

Variant	rs6082778
Chromosome Location	chr20:22654074-22654075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1203927	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1203935	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1543443	0.92[EUR][1000 genomes]
rs1571249	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1571251	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1571252	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2145058	0.94[ASN][1000 genomes]
rs2145059	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145060	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145061	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209796	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2224316	0.83[ASN][1000 genomes]
rs2424444	0.83[ASN][1000 genomes]
rs2424446	0.90[ASN][1000 genomes]
rs2424450	0.90[ASN][1000 genomes]
rs2424454	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424456	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424457	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424458	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424459	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499503	0.96[EUR][1000 genomes]
rs4815129	0.89[ASN][1000 genomes]
rs4815130	0.89[ASN][1000 genomes]
rs4815131	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4815132	0.94[ASN][1000 genomes]
rs4815134	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4815135	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55803110	1.00[ASN][1000 genomes]
rs6036168	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036169	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036170	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6036172	0.98[EUR][1000 genomes]
rs6036173	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6036175	0.95[EUR][1000 genomes]
rs6036176	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6048241	0.98[EUR][1000 genomes]
rs6048245	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048247	0.95[EUR][1000 genomes]
rs6048249	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6048253	0.82[EUR][1000 genomes]
rs6048254	0.86[EUR][1000 genomes]
rs6075933	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6075934	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6082765	0.83[ASN][1000 genomes]
rs6082774	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082777	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6082779	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082784	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6082789	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6082790	0.86[EUR][1000 genomes]
rs6113758	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113762	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6132536	1.00[ASN][1000 genomes]
rs6132537	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137712	0.82[ASN][1000 genomes]
rs6137721	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7273357	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304706	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73304707	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs747911	0.83[ASN][1000 genomes]
rs754855	0.83[ASN][1000 genomes]
rs910956	0.83[ASN][1000 genomes]
rs910957	0.84[ASN][1000 genomes]
rs975525	0.94[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22645600-22664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22652200-22659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22654000-22654600	Enhancers	Stomach Mucosa	stomach

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