Variant report

Variant	rs910956
Chromosome Location	chr20:22633155-22633156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22626256..22628397-chr20:22632199..22635114,3	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1007202	0.87[EUR][1000 genomes]
rs1007458	0.87[EUR][1000 genomes]
rs1146365	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1203920	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1203921	0.86[EUR][1000 genomes]
rs1203925	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1203927	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1203928	0.87[EUR][1000 genomes]
rs1203929	0.86[EUR][1000 genomes]
rs1203930	0.91[CEU][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs1203931	0.87[EUR][1000 genomes]
rs1203932	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs1203933	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1203934	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs1203935	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1203936	0.86[EUR][1000 genomes]
rs1203937	0.86[EUR][1000 genomes]
rs1203938	0.86[EUR][1000 genomes]
rs1203939	0.86[EUR][1000 genomes]
rs1203940	0.87[EUR][1000 genomes]
rs1203941	0.87[EUR][1000 genomes]
rs1203942	0.87[EUR][1000 genomes]
rs1203943	0.87[EUR][1000 genomes]
rs1203944	0.85[EUR][1000 genomes]
rs1203945	0.85[EUR][1000 genomes]
rs1203946	0.86[EUR][1000 genomes]
rs1203947	0.86[EUR][1000 genomes]
rs1203948	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1203949	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1203950	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12479757	0.85[ASN][1000 genomes]
rs1884742	0.95[EUR][1000 genomes]
rs2145058	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2145059	0.83[ASN][1000 genomes]
rs2145060	0.83[ASN][1000 genomes]
rs2145061	0.83[ASN][1000 genomes]
rs2180553	0.97[EUR][1000 genomes]
rs2224316	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424436	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2424442	0.95[EUR][1000 genomes]
rs2424443	0.95[EUR][1000 genomes]
rs2424444	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424446	0.92[ASN][1000 genomes]
rs2424450	0.92[ASN][1000 genomes]
rs2424454	0.86[ASN][1000 genomes]
rs2424456	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2424457	0.81[ASN][1000 genomes]
rs2424458	0.83[ASN][1000 genomes]
rs2424459	0.83[ASN][1000 genomes]
rs4815129	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4815130	0.94[ASN][1000 genomes]
rs4815131	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4815132	0.88[ASN][1000 genomes]
rs4815134	0.86[ASN][1000 genomes]
rs4815135	0.86[ASN][1000 genomes]
rs55803110	0.83[ASN][1000 genomes]
rs6036168	0.86[ASN][1000 genomes]
rs6036169	0.83[ASN][1000 genomes]
rs6048245	0.83[ASN][1000 genomes]
rs6075931	0.94[EUR][1000 genomes]
rs6082762	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6082765	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082774	0.83[ASN][1000 genomes]
rs6082778	0.83[ASN][1000 genomes]
rs6082779	0.83[ASN][1000 genomes]
rs6113758	0.83[ASN][1000 genomes]
rs6132536	0.83[ASN][1000 genomes]
rs6132537	0.83[ASN][1000 genomes]
rs6137712	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137721	0.83[ASN][1000 genomes]
rs7273357	0.83[ASN][1000 genomes]
rs73304707	0.82[ASN][1000 genomes]
rs747911	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747912	0.97[EUR][1000 genomes]
rs754855	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910957	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs975525	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs995734	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3442827	chr20:22632852-22637550	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22632400-22634200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:22632800-22633200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr20:22633000-22633200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr20:22633000-22633200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:22633000-22633200	Flanking Active TSS	Fetal Brain Male	brain
6	chr20:22633000-22633200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
7	chr20:22633000-22633200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
8	chr20:22633000-22633400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr20:22633000-22633800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:22633000-22633800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr20:22633000-22634000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:22633000-22634400	Enhancers	Colon Smooth Muscle	Colon
13	chr20:22633000-22634800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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