Variant report
| Variant | rs6132536 |
|---|---|
| Chromosome Location | chr20:22653900-22653901 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs1203927 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
| rs1203935 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
| rs2145058 | 0.94[ASN][1000 genomes] |
| rs2145059 | 1.00[ASN][1000 genomes] |
| rs2145060 | 1.00[ASN][1000 genomes] |
| rs2145061 | 1.00[ASN][1000 genomes] |
| rs2224316 | 0.83[ASN][1000 genomes] |
| rs2424444 | 0.83[ASN][1000 genomes] |
| rs2424446 | 0.90[ASN][1000 genomes] |
| rs2424450 | 0.90[ASN][1000 genomes] |
| rs2424454 | 0.97[ASN][1000 genomes] |
| rs2424456 | 0.97[ASN][1000 genomes] |
| rs2424457 | 0.97[ASN][1000 genomes] |
| rs2424458 | 1.00[ASN][1000 genomes] |
| rs2424459 | 1.00[ASN][1000 genomes] |
| rs4815129 | 0.89[ASN][1000 genomes] |
| rs4815130 | 0.89[ASN][1000 genomes] |
| rs4815131 | 0.94[ASN][1000 genomes] |
| rs4815132 | 0.94[ASN][1000 genomes] |
| rs4815134 | 0.97[ASN][1000 genomes] |
| rs4815135 | 0.97[ASN][1000 genomes] |
| rs55803110 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036168 | 0.97[ASN][1000 genomes] |
| rs6036169 | 1.00[ASN][1000 genomes] |
| rs6036170 | 0.81[ASN][1000 genomes] |
| rs6036173 | 0.90[ASN][1000 genomes] |
| rs6048245 | 1.00[ASN][1000 genomes] |
| rs6082765 | 0.83[ASN][1000 genomes] |
| rs6082774 | 1.00[ASN][1000 genomes] |
| rs6082778 | 1.00[ASN][1000 genomes] |
| rs6082779 | 1.00[ASN][1000 genomes] |
| rs6113758 | 1.00[ASN][1000 genomes] |
| rs6132537 | 1.00[ASN][1000 genomes] |
| rs6137712 | 0.82[ASN][1000 genomes] |
| rs6137721 | 1.00[ASN][1000 genomes] |
| rs7273357 | 1.00[ASN][1000 genomes] |
| rs73304707 | 0.99[ASN][1000 genomes] |
| rs747911 | 0.83[ASN][1000 genomes] |
| rs754855 | 0.83[ASN][1000 genomes] |
| rs910956 | 0.83[ASN][1000 genomes] |
| rs910957 | 0.84[ASN][1000 genomes] |
| rs975525 | 0.94[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22645600-22664400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr20:22652200-22659200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
