Variant report

Variant	rs6137712
Chromosome Location	chr20:22628936-22628937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22627996..22631252-chr20:22637108..22639822,3	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1007202	0.86[EUR][1000 genomes]
rs1007458	0.86[EUR][1000 genomes]
rs1146365	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1203920	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203921	0.87[EUR][1000 genomes]
rs1203925	0.87[EUR][1000 genomes]
rs1203927	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203928	0.86[EUR][1000 genomes]
rs1203929	0.87[EUR][1000 genomes]
rs1203930	0.87[EUR][1000 genomes]
rs1203931	0.86[EUR][1000 genomes]
rs1203932	0.86[EUR][1000 genomes]
rs1203933	0.87[EUR][1000 genomes]
rs1203934	0.86[EUR][1000 genomes]
rs1203935	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203936	0.87[EUR][1000 genomes]
rs1203937	0.87[EUR][1000 genomes]
rs1203938	0.86[EUR][1000 genomes]
rs1203939	0.87[EUR][1000 genomes]
rs1203940	0.86[EUR][1000 genomes]
rs1203941	0.86[EUR][1000 genomes]
rs1203942	0.86[EUR][1000 genomes]
rs1203943	0.86[EUR][1000 genomes]
rs1203944	0.85[EUR][1000 genomes]
rs1203945	0.85[EUR][1000 genomes]
rs1203946	0.86[EUR][1000 genomes]
rs1203947	0.87[EUR][1000 genomes]
rs1203948	0.84[EUR][1000 genomes]
rs1203949	0.86[EUR][1000 genomes]
rs1203950	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12479757	0.83[ASN][1000 genomes]
rs1884742	0.96[EUR][1000 genomes]
rs2145058	0.87[ASN][1000 genomes]
rs2145059	0.82[ASN][1000 genomes]
rs2145060	0.82[ASN][1000 genomes]
rs2145061	0.82[ASN][1000 genomes]
rs2180553	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2224316	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424436	0.86[EUR][1000 genomes]
rs2424442	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2424443	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2424444	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424446	0.91[ASN][1000 genomes]
rs2424450	0.91[ASN][1000 genomes]
rs2424454	0.84[ASN][1000 genomes]
rs2424456	0.84[ASN][1000 genomes]
rs2424458	0.82[ASN][1000 genomes]
rs2424459	0.82[ASN][1000 genomes]
rs4815129	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815130	0.92[ASN][1000 genomes]
rs4815131	0.87[ASN][1000 genomes]
rs4815132	0.87[ASN][1000 genomes]
rs4815134	0.84[ASN][1000 genomes]
rs4815135	0.84[ASN][1000 genomes]
rs55803110	0.82[ASN][1000 genomes]
rs6036168	0.84[ASN][1000 genomes]
rs6036169	0.82[ASN][1000 genomes]
rs6048245	0.82[ASN][1000 genomes]
rs6075931	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6082762	0.95[EUR][1000 genomes]
rs6082765	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6082774	0.82[ASN][1000 genomes]
rs6082778	0.82[ASN][1000 genomes]
rs6082779	0.82[ASN][1000 genomes]
rs6113758	0.82[ASN][1000 genomes]
rs6132536	0.82[ASN][1000 genomes]
rs6132537	0.82[ASN][1000 genomes]
rs6137721	0.82[ASN][1000 genomes]
rs7273357	0.82[ASN][1000 genomes]
rs73304707	0.81[ASN][1000 genomes]
rs747911	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs747912	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs754855	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910956	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910957	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs910960	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs975525	0.87[ASN][1000 genomes]
rs995734	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22627200-22629600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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