Variant report

Variant	rs73304707
Chromosome Location	chr20:22654559-22654560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1543443	0.92[EUR][1000 genomes]
rs1571249	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1571251	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1571252	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2145058	0.93[ASN][1000 genomes]
rs2145059	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2145060	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2145061	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209796	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2224316	0.82[ASN][1000 genomes]
rs2424444	0.82[ASN][1000 genomes]
rs2424446	0.89[ASN][1000 genomes]
rs2424450	0.89[ASN][1000 genomes]
rs2424454	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2424456	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2424457	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2424458	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2424459	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4499503	0.97[EUR][1000 genomes]
rs4815129	0.87[ASN][1000 genomes]
rs4815130	0.87[ASN][1000 genomes]
rs4815131	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4815132	0.93[ASN][1000 genomes]
rs4815134	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4815135	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55803110	0.99[ASN][1000 genomes]
rs6036168	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6036169	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036170	0.83[EUR][1000 genomes]
rs6036172	0.99[EUR][1000 genomes]
rs6036173	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6036175	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6036176	0.87[EUR][1000 genomes]
rs6048241	0.99[EUR][1000 genomes]
rs6048245	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048247	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6048249	0.94[EUR][1000 genomes]
rs6048253	0.83[EUR][1000 genomes]
rs6048254	0.86[EUR][1000 genomes]
rs6075933	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6075934	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6082765	0.82[ASN][1000 genomes]
rs6082774	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6082777	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6082778	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6082779	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6082784	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6082789	0.87[EUR][1000 genomes]
rs6082790	0.86[EUR][1000 genomes]
rs6113758	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6113762	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6132536	0.99[ASN][1000 genomes]
rs6132537	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6137712	0.81[ASN][1000 genomes]
rs6137721	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7273357	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73304706	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs747911	0.82[ASN][1000 genomes]
rs754855	0.82[ASN][1000 genomes]
rs910956	0.82[ASN][1000 genomes]
rs910957	0.83[ASN][1000 genomes]
rs975525	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520132	chr20:22654499-22657229	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22645600-22664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22652200-22659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22654000-22654600	Enhancers	Stomach Mucosa	stomach
4	chr20:22654200-22654800	Enhancers	Gastric	stomach
5	chr20:22654200-22654800	Enhancers	Pancreas	Pancrea

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