Variant report

Variant	rs6036173
Chromosome Location	chr20:22656646-22656647
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1571249	0.87[EUR][1000 genomes]
rs2145058	0.85[ASN][1000 genomes]
rs2145059	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2145060	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2145061	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2209796	0.88[EUR][1000 genomes]
rs2424446	0.81[ASN][1000 genomes]
rs2424450	0.81[ASN][1000 genomes]
rs2424454	0.87[ASN][1000 genomes]
rs2424456	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2424457	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424458	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424459	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4499503	0.85[EUR][1000 genomes]
rs4815131	0.85[ASN][1000 genomes]
rs4815132	0.85[ASN][1000 genomes]
rs4815134	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4815135	0.87[ASN][1000 genomes]
rs55803110	0.90[ASN][1000 genomes]
rs6036168	0.87[ASN][1000 genomes]
rs6036169	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6036172	0.87[EUR][1000 genomes]
rs6036175	0.88[EUR][1000 genomes]
rs6048241	0.87[EUR][1000 genomes]
rs6048245	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6048247	0.87[EUR][1000 genomes]
rs6048249	0.86[EUR][1000 genomes]
rs6075933	0.88[EUR][1000 genomes]
rs6075934	0.88[EUR][1000 genomes]
rs6082774	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6082777	0.87[EUR][1000 genomes]
rs6082778	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6082779	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6082784	0.88[EUR][1000 genomes]
rs6113758	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6113762	0.87[EUR][1000 genomes]
rs6132536	0.90[ASN][1000 genomes]
rs6132537	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6137721	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7273357	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73304706	0.88[EUR][1000 genomes]
rs73304707	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs975525	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520132	chr20:22654499-22657229	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22645600-22664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22652200-22659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22656000-22657200	Enhancers	Primary B cells from peripheral blood	blood
4	chr20:22656400-22658000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:22656400-22662200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links