Variant report

Variant	rs6036168
Chromosome Location	chr20:22643326-22643327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22639586..22642017-chr20:22643228..22644849,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1203927	0.83[CHB][hapmap]
rs1203935	0.83[CHB][hapmap]
rs1543443	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1571249	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1571251	0.80[EUR][1000 genomes]
rs1571252	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2145058	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145059	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145060	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2209796	0.88[EUR][1000 genomes]
rs2224316	0.86[ASN][1000 genomes]
rs2424444	0.86[ASN][1000 genomes]
rs2424445	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2424446	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424447	0.82[EUR][1000 genomes]
rs2424448	0.83[EUR][1000 genomes]
rs2424450	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424451	0.83[EUR][1000 genomes]
rs2424454	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424456	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2424458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424459	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4499503	0.90[EUR][1000 genomes]
rs4815129	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4815130	0.91[ASN][1000 genomes]
rs4815131	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4815132	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4815134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815135	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55803110	0.97[ASN][1000 genomes]
rs6036169	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036170	0.82[EUR][1000 genomes]
rs6036172	0.92[EUR][1000 genomes]
rs6036173	0.87[ASN][1000 genomes]
rs6036175	0.88[EUR][1000 genomes]
rs6048241	0.92[EUR][1000 genomes]
rs6048245	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048247	0.89[EUR][1000 genomes]
rs6048249	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs6048254	0.80[EUR][1000 genomes]
rs6075933	0.91[EUR][1000 genomes]
rs6075934	0.91[EUR][1000 genomes]
rs6082765	0.86[ASN][1000 genomes]
rs6082767	0.83[EUR][1000 genomes]
rs6082774	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082777	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6082778	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082779	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082784	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs6082789	0.81[EUR][1000 genomes]
rs6113758	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6113762	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6132536	0.97[ASN][1000 genomes]
rs6132537	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6137712	0.84[ASN][1000 genomes]
rs6137721	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7273357	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73304706	0.91[EUR][1000 genomes]
rs73304707	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs747911	0.86[ASN][1000 genomes]
rs754855	0.86[ASN][1000 genomes]
rs910956	0.86[ASN][1000 genomes]
rs910957	0.87[ASN][1000 genomes]
rs910960	0.80[ASN][1000 genomes]
rs975525	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22634000-22643400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:22634400-22643800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr20:22636200-22643400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:22640200-22643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr20:22640600-22643400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:22643000-22644000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr20:22643200-22645000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr20:22643200-22645400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr20:22643200-22645600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:22643200-22646200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links