Variant report

Variant	rs6082767
Chromosome Location	chr20:22638979-22638980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22627996..22631252-chr20:22637108..22639822,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1203925	0.85[JPT][hapmap]
rs1203930	0.84[JPT][hapmap]
rs1203932	0.85[JPT][hapmap]
rs1203933	0.85[JPT][hapmap]
rs1203934	0.85[JPT][hapmap]
rs1543443	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1571249	1.00[CEU][hapmap]
rs1571251	0.86[CEU][hapmap]
rs1571252	0.87[CEU][hapmap]
rs2145058	0.99[EUR][1000 genomes]
rs2145059	0.83[EUR][1000 genomes]
rs2145060	0.83[EUR][1000 genomes]
rs2145061	0.83[EUR][1000 genomes]
rs2180553	0.89[ASN][1000 genomes]
rs2424442	0.83[ASN][1000 genomes]
rs2424443	0.83[ASN][1000 genomes]
rs2424445	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424446	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2424447	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424448	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424450	0.99[EUR][1000 genomes]
rs2424451	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424454	0.81[EUR][1000 genomes]
rs2424456	0.83[EUR][1000 genomes]
rs2424457	0.83[EUR][1000 genomes]
rs2424458	0.83[EUR][1000 genomes]
rs4499503	0.82[ASN][1000 genomes]
rs4815131	0.99[EUR][1000 genomes]
rs4815132	0.99[EUR][1000 genomes]
rs4815133	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4815134	0.83[EUR][1000 genomes]
rs6036168	0.83[EUR][1000 genomes]
rs6036169	0.83[EUR][1000 genomes]
rs6036172	0.94[ASN][1000 genomes]
rs6036176	0.86[CEU][hapmap]
rs6048241	0.94[ASN][1000 genomes]
rs6048249	1.00[CEU][hapmap]
rs6075933	0.94[ASN][1000 genomes]
rs6075934	0.94[ASN][1000 genomes]
rs6082762	0.83[ASN][1000 genomes]
rs6082777	0.94[ASN][1000 genomes]
rs6082784	1.00[CEU][hapmap]
rs6082789	0.86[CEU][hapmap]
rs6113758	0.84[EUR][1000 genomes]
rs6113762	0.94[ASN][1000 genomes]
rs73304706	0.94[ASN][1000 genomes]
rs747912	0.89[ASN][1000 genomes]
rs754855	0.81[AMR][1000 genomes]
rs975525	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22634000-22643400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:22634200-22639400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr20:22634400-22639000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr20:22634400-22639600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr20:22634400-22643800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr20:22636200-22643400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:22636400-22639600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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