Variant report

Variant	rs60401186
Chromosome Location	chr9:116761688-116761689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116569470..116570687-chr9:116760574..116761781,7	MCF-7	breast:
2	chr9:116499738..116500508-chr9:116760756..116761746,2	MCF-7	breast:
3	chr9:116615369..116616528-chr9:116760816..116761717,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16911662	1.00[EUR][1000 genomes]
rs16912115	1.00[EUR][1000 genomes]
rs55823556	1.00[EUR][1000 genomes]
rs57447464	1.00[EUR][1000 genomes]
rs57659453	1.00[EUR][1000 genomes]
rs58238706	1.00[EUR][1000 genomes]
rs58769230	1.00[EUR][1000 genomes]
rs59445762	1.00[EUR][1000 genomes]
rs60562588	1.00[EUR][1000 genomes]
rs61047963	1.00[EUR][1000 genomes]
rs73658311	1.00[EUR][1000 genomes]
rs73658312	1.00[EUR][1000 genomes]
rs73658313	1.00[EUR][1000 genomes]
rs73658314	1.00[EUR][1000 genomes]
rs73658316	1.00[EUR][1000 genomes]
rs73658317	1.00[EUR][1000 genomes]
rs73658320	1.00[EUR][1000 genomes]
rs73658321	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
5	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:116752200-116764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:116752400-116762000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:116752800-116762600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:116753600-116764000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:116753600-116764000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:116753600-116764600	Weak transcription	A549	lung
15	chr9:116754200-116762200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:116755400-116768000	Weak transcription	HSMM	muscle
17	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
19	chr9:116756600-116762000	Weak transcription	NHDF-Ad	bronchial
20	chr9:116756600-116764200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:116756600-116765600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:116756600-116766400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:116756800-116761800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:116756800-116762000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:116756800-116762800	Weak transcription	NHEK	skin
26	chr9:116756800-116765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:116756800-116765200	Weak transcription	NH-A	brain
28	chr9:116756800-116765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:116756800-116768000	Weak transcription	Thymus	Thymus
30	chr9:116756800-116768800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
32	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:116757000-116761800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:116757000-116761800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:116757000-116761800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:116757000-116761800	Weak transcription	Osteobl	bone
37	chr9:116757000-116762000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:116757000-116762000	Weak transcription	Brain Anterior Caudate	brain
39	chr9:116757000-116763000	Weak transcription	Pancreas	Pancrea
40	chr9:116757000-116763400	Weak transcription	Right Ventricle	heart
41	chr9:116757000-116764000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:116757000-116764200	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:116757000-116765000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:116757000-116765000	Weak transcription	Left Ventricle	heart
45	chr9:116757000-116765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:116757000-116765400	Weak transcription	Brain Substantia Nigra	brain
47	chr9:116757000-116765600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:116757000-116766000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr9:116757000-116766200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr9:116757000-116770200	Weak transcription	Aorta	Aorta

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