Variant report

Variant	rs73658311
Chromosome Location	chr9:116756997-116756998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116753360..116755709-chr9:116755784..116758340,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16911662	1.00[EUR][1000 genomes]
rs16912115	1.00[EUR][1000 genomes]
rs55823556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57447464	1.00[EUR][1000 genomes]
rs57659453	1.00[EUR][1000 genomes]
rs58238706	1.00[EUR][1000 genomes]
rs58710256	1.00[AMR][1000 genomes]
rs58769230	1.00[EUR][1000 genomes]
rs59445762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60401186	1.00[EUR][1000 genomes]
rs60562588	1.00[EUR][1000 genomes]
rs61047963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61086451	1.00[AMR][1000 genomes]
rs73658312	1.00[EUR][1000 genomes]
rs73658313	1.00[EUR][1000 genomes]
rs73658314	1.00[EUR][1000 genomes]
rs73658316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
5	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:116749800-116759200	Enhancers	Liver	Liver
8	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:116752200-116760000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:116752200-116764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:116752400-116757000	Enhancers	Lung	lung
13	chr9:116752400-116762000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:116752800-116757200	Enhancers	Stomach Mucosa	stomach
15	chr9:116752800-116762600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:116753400-116757000	Enhancers	Left Ventricle	heart
17	chr9:116753400-116757000	Enhancers	Right Atrium	heart
18	chr9:116753400-116758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:116753400-116758800	Weak transcription	Fetal Intestine Large	intestine
20	chr9:116753600-116757000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:116753600-116757000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:116753600-116757200	Enhancers	Fetal Muscle Leg	muscle
23	chr9:116753600-116764000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr9:116753600-116764000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:116753600-116764600	Weak transcription	A549	lung
26	chr9:116753800-116757000	Enhancers	Pancreas	Pancrea
27	chr9:116754000-116757000	Enhancers	Fetal Lung	lung
28	chr9:116754200-116757000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:116754200-116757000	Enhancers	Primary B cells from peripheral blood	blood
30	chr9:116754200-116757000	Enhancers	Right Ventricle	heart
31	chr9:116754200-116759600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:116754200-116762200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:116754400-116757000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr9:116754400-116757000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:116754400-116757000	Enhancers	Aorta	Aorta
36	chr9:116754400-116757000	Enhancers	Colon Smooth Muscle	Colon
37	chr9:116754400-116757600	Enhancers	Brain Germinal Matrix	brain
38	chr9:116754400-116758600	Enhancers	Fetal Heart	heart
39	chr9:116754400-116760000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:116754600-116757000	Enhancers	Colonic Mucosa	Colon
41	chr9:116754600-116758200	Enhancers	Fetal Brain Female	brain
42	chr9:116755000-116757000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:116755200-116759600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:116755400-116757000	Enhancers	Adipose Nuclei	Adipose
45	chr9:116755400-116757000	Genic enhancers	Fetal Stomach	stomach
46	chr9:116755400-116768000	Weak transcription	HSMM	muscle
47	chr9:116755600-116757000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:116755600-116757000	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr9:116755600-116757000	Enhancers	Brain Angular Gyrus	brain
50	chr9:116755600-116757000	Enhancers	Brain Anterior Caudate	brain

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