Variant report

Variant	rs55823556
Chromosome Location	chr9:116748616-116748617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116741933..116743924-chr9:116747606..116750351,2	MCF-7	breast:
2	chr9:116744244..116746965-chr9:116747110..116750106,2	K562	blood:
3	chr9:116744244..116746965-chr9:116747110..116750106,4	K562	blood:
4	chr9:116748586..116750323-chr9:116751907..116753737,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16911662	1.00[EUR][1000 genomes]
rs16912115	1.00[EUR][1000 genomes]
rs57447464	1.00[EUR][1000 genomes]
rs57659453	1.00[EUR][1000 genomes]
rs58238706	1.00[EUR][1000 genomes]
rs58710256	1.00[AMR][1000 genomes]
rs58769230	1.00[EUR][1000 genomes]
rs59445762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60401186	1.00[EUR][1000 genomes]
rs60562588	1.00[EUR][1000 genomes]
rs61047963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61086451	1.00[AMR][1000 genomes]
rs73658311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658312	1.00[EUR][1000 genomes]
rs73658313	1.00[EUR][1000 genomes]
rs73658314	1.00[EUR][1000 genomes]
rs73658316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:116720800-116750600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:116721200-116750800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:116721200-116756400	Weak transcription	NHEK	skin
6	chr9:116721400-116751200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:116728200-116754600	Weak transcription	Thymus	Thymus
8	chr9:116731800-116755600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:116732000-116750600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:116732000-116750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:116732000-116750600	Weak transcription	HMEC	breast
12	chr9:116732000-116753000	Weak transcription	Esophagus	oesophagus
13	chr9:116732200-116750000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:116732200-116750800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:116732200-116753800	Weak transcription	Fetal Brain Female	brain
16	chr9:116732200-116754200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:116732400-116750400	Weak transcription	Brain Germinal Matrix	brain
20	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
22	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:116733600-116750200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:116734200-116750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:116734200-116750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:116734200-116750600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:116735000-116750600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:116735800-116754200	Weak transcription	Right Ventricle	heart
29	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:116736600-116754000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:116736800-116750200	Weak transcription	Fetal Intestine Large	intestine
32	chr9:116736800-116750600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:116736800-116751600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:116737200-116750200	Weak transcription	A549	lung
35	chr9:116737200-116750600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:116738200-116750800	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:116738800-116750800	Strong transcription	Fetal Stomach	stomach
38	chr9:116738800-116753400	Weak transcription	Brain Anterior Caudate	brain
39	chr9:116738800-116753800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr9:116740000-116750600	Weak transcription	Lung	lung
41	chr9:116740200-116752800	Weak transcription	Stomach Mucosa	stomach
42	chr9:116741200-116754400	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:116741400-116756200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:116741600-116754800	Weak transcription	Primary B cells from cord blood	blood
45	chr9:116742000-116750200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:116742200-116750000	Weak transcription	NHLF	lung
47	chr9:116742200-116750600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:116742200-116751000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:116742400-116750800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:116742400-116751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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