Variant report

Variant	rs58710256
Chromosome Location	chr9:116821536-116821537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116820042..116822386-chr9:116830008..116831532,2	K562	blood:
2	chr9:116718450..116721380-chr9:116821221..116823441,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55823556	1.00[AMR][1000 genomes]
rs59445762	1.00[AMR][1000 genomes]
rs61047963	1.00[AMR][1000 genomes]
rs61086451	1.00[AMR][1000 genomes]
rs72762642	1.00[ASN][1000 genomes]
rs73658311	1.00[AMR][1000 genomes]
rs73658316	1.00[AMR][1000 genomes]
rs73658317	1.00[AMR][1000 genomes]
rs73658320	1.00[AMR][1000 genomes]
rs73658321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	nsv466514	chr9:116810890-116867054	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv615222	chr9:116810890-116867054	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
6	esv2761285	chr9:116811897-117103268	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
7	nsv466515	chr9:116814661-116867054	Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv615223	chr9:116814661-116867054	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv528822	chr9:116815777-116867054	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv466516	chr9:116815777-116867054	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv466518	chr9:116815777-116867054	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv466519	chr9:116815777-116867054	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv466520	chr9:116815777-116867054	Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv466521	chr9:116815777-116867054	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv466522	chr9:116815777-116867054	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv466523	chr9:116815777-116867054	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv471319	chr9:116815777-116867054	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	nsv615224	chr9:116815777-116867054	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116795200-116821800	Weak transcription	Right Atrium	heart
2	chr9:116809800-116821600	Strong transcription	Fetal Stomach	stomach
3	chr9:116809800-116822000	Strong transcription	Fetal Intestine Small	intestine
4	chr9:116811400-116822000	Weak transcription	Fetal Kidney	kidney
5	chr9:116812000-116821600	Weak transcription	Brain Angular Gyrus	brain
6	chr9:116812000-116824200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:116812200-116824600	Weak transcription	Colonic Mucosa	Colon
8	chr9:116812200-116824800	Weak transcription	Right Ventricle	heart
9	chr9:116812200-116827400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:116812400-116824400	Weak transcription	Stomach Mucosa	stomach
11	chr9:116812600-116821600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:116812800-116821800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:116812800-116824400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:116813000-116822000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:116813200-116823000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:116813200-116823600	Weak transcription	Esophagus	oesophagus
17	chr9:116813800-116821800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:116813800-116824600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:116814200-116822400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:116814200-116824600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:116814400-116822400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:116814600-116821800	Weak transcription	Brain Anterior Caudate	brain
23	chr9:116814600-116824400	Weak transcription	A549	lung
24	chr9:116814800-116823000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:116814800-116824400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:116815000-116822600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:116815000-116824600	Weak transcription	NHLF	lung
28	chr9:116815400-116821800	Weak transcription	Osteobl	bone
29	chr9:116816000-116825600	Weak transcription	Fetal Brain Female	brain
30	chr9:116816200-116821600	Weak transcription	Adipose Nuclei	Adipose
31	chr9:116816200-116821600	Weak transcription	Fetal Lung	lung
32	chr9:116816200-116822200	Weak transcription	Liver	Liver
33	chr9:116816400-116821600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:116816400-116821800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:116819400-116824200	Weak transcription	Gastric	stomach
36	chr9:116819800-116821600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:116819800-116821600	Weak transcription	Pancreas	Pancrea
38	chr9:116819800-116822400	Weak transcription	Spleen	Spleen
39	chr9:116820000-116823200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:116820000-116824200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:116820000-116824200	Weak transcription	Fetal Intestine Large	intestine
42	chr9:116820600-116822400	Weak transcription	Brain Germinal Matrix	brain
43	chr9:116820600-116823800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:116820600-116823800	Enhancers	Fetal Muscle Leg	muscle
45	chr9:116820800-116822600	Enhancers	HepG2	liver
46	chr9:116821000-116821600	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr9:116821000-116821800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:116821000-116822600	Enhancers	Aorta	Aorta
49	chr9:116821000-116823000	Enhancers	HSMMtube	muscle
50	chr9:116821000-116823600	Enhancers	Fetal Muscle Trunk	muscle

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