Variant report

Variant	rs59445762
Chromosome Location	chr9:116800190-116800191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16911662	1.00[EUR][1000 genomes]
rs16912115	1.00[EUR][1000 genomes]
rs55823556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57447464	1.00[EUR][1000 genomes]
rs57659453	1.00[EUR][1000 genomes]
rs58238706	1.00[EUR][1000 genomes]
rs58710256	1.00[AMR][1000 genomes]
rs58769230	1.00[EUR][1000 genomes]
rs60401186	1.00[EUR][1000 genomes]
rs60562588	1.00[EUR][1000 genomes]
rs61047963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61086451	1.00[AMR][1000 genomes]
rs73658311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658312	1.00[EUR][1000 genomes]
rs73658313	1.00[EUR][1000 genomes]
rs73658314	1.00[EUR][1000 genomes]
rs73658316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
4	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
5	chr9:116785200-116811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:116785400-116810600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:116787000-116800200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:116787000-116803000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:116787000-116812800	Weak transcription	Primary B cells from cord blood	blood
10	chr9:116787400-116800200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:116788000-116802400	Strong transcription	Adipose Nuclei	Adipose
12	chr9:116789600-116800600	Strong transcription	NHLF	lung
13	chr9:116789600-116808600	Weak transcription	HMEC	breast
14	chr9:116790600-116801400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:116790600-116801600	Strong transcription	Spleen	Spleen
16	chr9:116790600-116802600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:116790600-116802600	Strong transcription	Liver	Liver
18	chr9:116792200-116802800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:116792200-116810400	Weak transcription	Thymus	Thymus
20	chr9:116792400-116801600	Strong transcription	HUVEC	blood vessel
21	chr9:116793000-116802600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:116793200-116811200	Weak transcription	Stomach Mucosa	stomach
23	chr9:116793200-116812200	Weak transcription	K562	blood
24	chr9:116793200-116813800	Weak transcription	NHEK	skin
25	chr9:116794000-116802400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:116794200-116800800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:116794200-116801600	Strong transcription	Pancreas	Pancrea
28	chr9:116794600-116801400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:116795000-116801600	Strong transcription	Fetal Intestine Large	intestine
30	chr9:116795200-116802600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr9:116795200-116821800	Weak transcription	Right Atrium	heart
32	chr9:116795600-116802400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:116795800-116801600	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:116796000-116802600	Strong transcription	A549	lung
35	chr9:116796000-116802800	Strong transcription	Fetal Lung	lung
36	chr9:116796200-116815800	Weak transcription	Small Intestine	intestine
37	chr9:116796400-116801200	Weak transcription	NHDF-Ad	bronchial
38	chr9:116796800-116802800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:116797200-116802200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:116797800-116802600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr9:116798000-116800800	Strong transcription	Gastric	stomach
42	chr9:116798000-116802400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr9:116798000-116802400	Strong transcription	NH-A	brain
44	chr9:116798000-116802600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:116798000-116802600	Strong transcription	Ovary	ovary
46	chr9:116798000-116802800	Strong transcription	Fetal Muscle Leg	muscle
47	chr9:116798200-116800200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:116798200-116801000	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:116798400-116800400	Strong transcription	Pancreatic Islets	Pancreatic Islet
50	chr9:116798400-116801000	Strong transcription	Left Ventricle	heart

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