Variant report

Variant	rs73658312
Chromosome Location	chr9:116767154-116767155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116767040..116768781-chr9:116770411..116772042,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16911662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55823556	1.00[EUR][1000 genomes]
rs57447464	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57659453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58238706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58769230	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59445762	1.00[EUR][1000 genomes]
rs60401186	1.00[EUR][1000 genomes]
rs60562588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61047963	1.00[EUR][1000 genomes]
rs73658311	1.00[EUR][1000 genomes]
rs73658313	1.00[EUR][1000 genomes]
rs73658314	1.00[EUR][1000 genomes]
rs73658316	1.00[EUR][1000 genomes]
rs73658317	1.00[EUR][1000 genomes]
rs73658320	1.00[EUR][1000 genomes]
rs73658321	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
4	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:116755400-116768000	Weak transcription	HSMM	muscle
8	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
10	chr9:116756800-116768000	Weak transcription	Thymus	Thymus
11	chr9:116756800-116768800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
13	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:116757000-116770200	Weak transcription	Aorta	Aorta
15	chr9:116757000-116773600	Weak transcription	HMEC	breast
16	chr9:116757000-116779600	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:116757000-116779800	Weak transcription	Colonic Mucosa	Colon
18	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
19	chr9:116757600-116772200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:116758200-116767400	Strong transcription	Fetal Intestine Small	intestine
21	chr9:116758400-116775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:116760000-116773400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:116760800-116771600	Strong transcription	NHLF	lung
24	chr9:116762200-116770800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:116762200-116772800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:116762200-116775400	Strong transcription	Liver	Liver
27	chr9:116762200-116780400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:116762400-116776800	Strong transcription	Fetal Intestine Large	intestine
29	chr9:116762800-116768000	Enhancers	Placenta	Placenta
30	chr9:116763000-116769400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:116763400-116768000	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr9:116763800-116777000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:116764000-116768000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:116764000-116772200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:116764200-116767200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:116764200-116767400	Enhancers	Fetal Heart	heart
37	chr9:116764400-116767400	Enhancers	Fetal Brain Male	brain
38	chr9:116764400-116767600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr9:116764400-116768000	Genic enhancers	Fetal Muscle Leg	muscle
40	chr9:116764400-116771000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:116764600-116767400	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:116764600-116767800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:116765000-116767600	Genic enhancers	HUVEC	blood vessel
45	chr9:116765000-116783200	Weak transcription	NHEK	skin
46	chr9:116765200-116767200	Enhancers	Brain Germinal Matrix	brain
47	chr9:116765200-116767200	Enhancers	NH-A	brain
48	chr9:116765200-116767600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr9:116765200-116768400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:116765200-116768600	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links