Variant report
| Variant | rs60420555 |
|---|---|
| Chromosome Location | chr6:79996543-79996544 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10484945 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1335536 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16890581 | 1.00[EUR][1000 genomes] |
| rs196711 | 1.00[EUR][1000 genomes] |
| rs196718 | 1.00[EUR][1000 genomes] |
| rs196719 | 1.00[EUR][1000 genomes] |
| rs55654065 | 1.00[EUR][1000 genomes] |
| rs55779333 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56125439 | 1.00[EUR][1000 genomes] |
| rs56177348 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56857693 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56926933 | 1.00[EUR][1000 genomes] |
| rs57810626 | 1.00[EUR][1000 genomes] |
| rs59392118 | 1.00[EUR][1000 genomes] |
| rs61411441 | 1.00[EUR][1000 genomes] |
| rs6904575 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73466218 | 1.00[EUR][1000 genomes] |
| rs73466221 | 1.00[EUR][1000 genomes] |
| rs73466224 | 1.00[EUR][1000 genomes] |
| rs73466240 | 1.00[EUR][1000 genomes] |
| rs73466263 | 1.00[EUR][1000 genomes] |
| rs73466271 | 1.00[EUR][1000 genomes] |
| rs73466273 | 1.00[EUR][1000 genomes] |
| rs73466290 | 1.00[EUR][1000 genomes] |
| rs73767528 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7753588 | 1.00[EUR][1000 genomes] |
| rs7762406 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79988600-80011000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
