Variant report

Variant	rs61411441
Chromosome Location	chr6:79827625-79827626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs1335536	1.00[EUR][1000 genomes]
rs35686657	1.00[EUR][1000 genomes]
rs55654065	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[EUR][1000 genomes]
rs56125439	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56735945	1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57810626	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58284219	1.00[EUR][1000 genomes]
rs59392118	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60132767	1.00[EUR][1000 genomes]
rs60420555	1.00[EUR][1000 genomes]
rs61649774	1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	1.00[EUR][1000 genomes]
rs73462283	1.00[EUR][1000 genomes]
rs73462294	1.00[EUR][1000 genomes]
rs73462296	1.00[EUR][1000 genomes]
rs73464119	1.00[EUR][1000 genomes]
rs73464137	1.00[EUR][1000 genomes]
rs73464147	1.00[EUR][1000 genomes]
rs73466210	1.00[EUR][1000 genomes]
rs73466218	1.00[EUR][1000 genomes]
rs73466221	1.00[EUR][1000 genomes]
rs73466224	1.00[EUR][1000 genomes]
rs73466237	1.00[AFR][1000 genomes]
rs73466240	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466263	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466271	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466273	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466290	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73764092	1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]
rs7762406	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79827400-79827800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:79827400-79827800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:79827600-79827800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:79827600-79827800	Enhancers	Psoas Muscle	Psoas
5	chr6:79827600-79828000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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