Variant report

Variant	rs56735945
Chromosome Location	chr6:79703491-79703492
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79696346..79699328-chr6:79702014..79705060,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs35686657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55682143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57023887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73764092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648800-79714400	Weak transcription	Gastric	stomach
2	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
3	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
4	chr6:79659600-79704000	Weak transcription	Lung	lung
5	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
6	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:79669800-79707000	Weak transcription	Aorta	Aorta
9	chr6:79675200-79704600	Weak transcription	Small Intestine	intestine
10	chr6:79675800-79706800	Weak transcription	NHEK	skin
11	chr6:79676000-79703600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:79687000-79709400	Strong transcription	Duodenum Mucosa	Duodenum
13	chr6:79687000-79714400	Strong transcription	Liver	Liver
14	chr6:79687000-79715800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:79687000-79715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:79687200-79709400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:79687200-79709400	Strong transcription	Fetal Intestine Large	intestine
20	chr6:79687200-79714400	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:79687200-79714600	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr6:79687200-79714600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:79687200-79714800	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr6:79687200-79715000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:79687200-79715400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:79687200-79715600	Strong transcription	Primary B cells from cord blood	blood
27	chr6:79687200-79715600	Strong transcription	Fetal Thymus	thymus
28	chr6:79687200-79716000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:79687200-79717600	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr6:79687600-79718600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:79687600-79775000	Strong transcription	Dnd41	blood
34	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:79688000-79709400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:79688400-79708800	Strong transcription	GM12878-XiMat	blood
37	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:79688800-79709000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:79693800-79705600	Strong transcription	HSMM	muscle
42	chr6:79695600-79704000	Weak transcription	Pancreas	Pancrea
43	chr6:79697000-79703600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:79697000-79714200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:79698000-79707200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:79698600-79705600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr6:79699200-79703800	Weak transcription	Fetal Intestine Small	intestine
48	chr6:79699200-79704800	Weak transcription	NHLF	lung
49	chr6:79699600-79709400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:79699800-79712400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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