Variant report

Variant	rs58284219
Chromosome Location	chr6:79760824-79760825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79757003..79760013-chr6:79760325..79763644,4	K562	blood:
2	chr6:79757003..79758754-chr6:79759344..79761825,2	K562	blood:
3	chr6:79753793..79756103-chr6:79759562..79763540,4	K562	blood:
4	chr6:79759623..79761788-chr6:79773682..79776640,2	K562	blood:
5	chr6:79760341..79764703-chr6:79769573..79773396,4	MCF-7	breast:
6	chr6:79757654..79762707-chr6:79762801..79766405,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs1335536	1.00[EUR][1000 genomes]
rs35686657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55682143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56735945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57023887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73764092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]
rs7762406	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
5	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
7	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
9	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:79727600-79761800	Weak transcription	Fetal Brain Male	brain
13	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
15	chr6:79732200-79774600	Weak transcription	Gastric	stomach
16	chr6:79733000-79761800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:79733000-79765800	Weak transcription	Lung	lung
18	chr6:79733200-79761800	Weak transcription	Thymus	Thymus
19	chr6:79733600-79765200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:79734000-79768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:79736200-79762000	Weak transcription	Brain Anterior Caudate	brain
23	chr6:79739000-79780000	Weak transcription	NHLF	lung
24	chr6:79739400-79769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:79741000-79761800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
27	chr6:79742400-79765200	Weak transcription	Small Intestine	intestine
28	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:79743400-79769600	Weak transcription	NHEK	skin
30	chr6:79745800-79761800	Weak transcription	Osteobl	bone
31	chr6:79748200-79761800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:79748200-79761800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:79748200-79761800	Weak transcription	Ovary	ovary
34	chr6:79748200-79774000	Weak transcription	Fetal Heart	heart
35	chr6:79748200-79774400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:79748400-79761800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:79748400-79761800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:79748400-79762000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:79749200-79761800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:79749200-79761800	Weak transcription	Fetal Kidney	kidney
41	chr6:79749200-79765600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:79749600-79761800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:79751200-79761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:79751200-79761800	Weak transcription	Brain Angular Gyrus	brain
45	chr6:79751200-79765800	Weak transcription	Left Ventricle	heart
46	chr6:79751600-79761600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:79751600-79774600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:79751800-79761800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:79751800-79762400	Weak transcription	Hela-S3	cervix
50	chr6:79751800-79765200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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