Variant report

Variant	rs6917206
Chromosome Location	chr6:79769714-79769715
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79769046..79772088-chr6:79787371..79789368,3	MCF-7	breast:
2	chr6:79764144..79766429-chr6:79768254..79771136,3	K562	blood:
3	chr6:79760341..79764703-chr6:79769573..79773396,4	MCF-7	breast:
4	chr6:79768855..79771844-chr6:79773378..79775039,2	K562	blood:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs1335536	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs35686657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55682143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56735945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57023887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs73462228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73764092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]
rs7762406	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
5	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
6	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
8	chr6:79732200-79774600	Weak transcription	Gastric	stomach
9	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:79739000-79780000	Weak transcription	NHLF	lung
11	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
12	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:79748200-79774000	Weak transcription	Fetal Heart	heart
14	chr6:79748200-79774400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:79751600-79774600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:79755000-79785400	Weak transcription	Colonic Mucosa	Colon
17	chr6:79755600-79771000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:79756600-79775000	Weak transcription	Pancreas	Pancrea
19	chr6:79758400-79770800	Strong transcription	Fetal Thymus	thymus
20	chr6:79759200-79774600	Weak transcription	Fetal Stomach	stomach
21	chr6:79759400-79773000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:79759600-79771000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:79759600-79780200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:79760000-79771200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:79760200-79771200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:79760600-79770600	Strong transcription	Liver	Liver
27	chr6:79760600-79771800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:79760600-79785400	Weak transcription	Right Ventricle	heart
29	chr6:79760600-79786800	Weak transcription	Spleen	Spleen
30	chr6:79761400-79771000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:79762200-79774200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:79763200-79770600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:79763200-79776600	Weak transcription	Fetal Intestine Small	intestine
34	chr6:79763600-79770600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:79763600-79771800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:79763600-79774600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:79763800-79770600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:79764000-79782200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:79764400-79770600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:79764600-79770600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:79764600-79770600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr6:79764600-79770600	Strong transcription	GM12878-XiMat	blood
43	chr6:79764800-79770600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:79764800-79770600	Strong transcription	Placenta	Placenta
45	chr6:79764800-79770600	Strong transcription	HepG2	liver
46	chr6:79764800-79771800	Strong transcription	Primary B cells from cord blood	blood
47	chr6:79765000-79770400	Strong transcription	Adipose Nuclei	Adipose
48	chr6:79765000-79770400	Strong transcription	Fetal Brain Female	brain
49	chr6:79765000-79770600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:79765000-79770600	Strong transcription	Primary B cells from peripheral blood	blood

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