Variant report

Variant	rs35686657
Chromosome Location	chr6:79752596-79752597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79752412..79754559-chr6:79755981..79758600,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs1335536	1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55682143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56735945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57023887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73764092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]
rs7762406	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
4	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
6	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
8	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
10	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:79727600-79761800	Weak transcription	Fetal Brain Male	brain
14	chr6:79728000-79753000	Weak transcription	Brain Germinal Matrix	brain
15	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
17	chr6:79732200-79774600	Weak transcription	Gastric	stomach
18	chr6:79732400-79756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:79733000-79761800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:79733000-79765800	Weak transcription	Lung	lung
21	chr6:79733200-79761800	Weak transcription	Thymus	Thymus
22	chr6:79733600-79765200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:79733800-79759800	Weak transcription	HMEC	breast
24	chr6:79734000-79768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:79734800-79758400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:79736200-79762000	Weak transcription	Brain Anterior Caudate	brain
28	chr6:79737200-79752600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:79739000-79780000	Weak transcription	NHLF	lung
30	chr6:79739400-79769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:79741000-79761800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:79742000-79752800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
34	chr6:79742400-79760800	Weak transcription	NH-A	brain
35	chr6:79742400-79765200	Weak transcription	Small Intestine	intestine
36	chr6:79742600-79755800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:79743400-79759600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:79743400-79769600	Weak transcription	NHEK	skin
40	chr6:79743600-79753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:79743800-79755600	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:79744200-79756000	Strong transcription	Primary B cells from cord blood	blood
43	chr6:79744800-79755600	Weak transcription	Brain Substantia Nigra	brain
44	chr6:79745400-79752800	Strong transcription	Fetal Thymus	thymus
45	chr6:79745600-79756000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:79745600-79756800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:79745800-79761800	Weak transcription	Osteobl	bone
48	chr6:79746200-79752800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:79746200-79753000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr6:79746200-79756200	Strong transcription	HUES48 Cell Line	embryonic stem cell

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