Variant report

Variant	rs55682143
Chromosome Location	chr6:79591446-79591447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79583511..79586825-chr6:79590200..79593930,3	K562	blood:
2	chr6:79584398..79586825-chr6:79590482..79592953,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs35686657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56735945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57023887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58284219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60132767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61649774	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474280	1.00[EUR][1000 genomes]
rs73764092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79577800-79597200	Weak transcription	Gastric	stomach
2	chr6:79578200-79592400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:79578200-79592800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:79578200-79597800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:79578200-79608600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:79578200-79608600	Weak transcription	Left Ventricle	heart
7	chr6:79578200-79613600	Weak transcription	HSMM	muscle
8	chr6:79578400-79593400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:79578400-79613800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
12	chr6:79578600-79593200	Weak transcription	NHEK	skin
13	chr6:79578600-79596000	Weak transcription	Fetal Heart	heart
14	chr6:79578600-79596600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:79578600-79598200	Weak transcription	HUVEC	blood vessel
16	chr6:79578600-79604800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:79578600-79612400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:79578600-79618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:79578800-79602800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:79578800-79608600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:79578800-79613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:79581800-79593600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:79582000-79596600	Weak transcription	Ovary	ovary
24	chr6:79582000-79608400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:79584800-79608600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:79585200-79619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:79585200-79620200	Weak transcription	Fetal Lung	lung
28	chr6:79587600-79607600	Weak transcription	Dnd41	blood
29	chr6:79587600-79611200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:79587800-79608400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:79588000-79596200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:79588000-79596600	Weak transcription	Fetal Kidney	kidney
33	chr6:79588000-79619800	Weak transcription	Fetal Brain Female	brain
34	chr6:79588200-79598600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:79588200-79602000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:79588200-79611800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:79588200-79611800	Weak transcription	Pancreas	Pancrea
38	chr6:79588200-79612000	Weak transcription	Fetal Stomach	stomach
39	chr6:79588200-79616400	Weak transcription	Primary T cells from cord blood	blood
40	chr6:79588600-79597800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:79589600-79593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:79589600-79595600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:79589600-79596400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:79589600-79597000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:79589600-79600800	Weak transcription	Lung	lung
46	chr6:79589600-79618200	Weak transcription	Aorta	Aorta
47	chr6:79589600-79619800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:79589800-79620200	Weak transcription	Fetal Brain Male	brain

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