Variant report

Variant	rs73764092
Chromosome Location	chr6:79742813-79742814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs1335536	1.00[EUR][1000 genomes]
rs35686657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55682143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56735945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57023887	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:79706600-79747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
6	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
8	chr6:79707800-79745200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
11	chr6:79713600-79747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:79714600-79747000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
15	chr6:79725200-79747000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:79726000-79751400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:79726600-79747000	Weak transcription	Fetal Brain Female	brain
19	chr6:79726600-79751800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:79726800-79750200	Weak transcription	Hela-S3	cervix
22	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:79727600-79750200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:79727600-79761800	Weak transcription	Fetal Brain Male	brain
25	chr6:79728000-79753000	Weak transcription	Brain Germinal Matrix	brain
26	chr6:79728600-79750200	Weak transcription	Fetal Stomach	stomach
27	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
29	chr6:79731800-79743400	Strong transcription	Primary B cells from cord blood	blood
30	chr6:79732200-79744600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:79732200-79774600	Weak transcription	Gastric	stomach
32	chr6:79732400-79756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:79733000-79746800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:79733000-79747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:79733000-79761800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:79733000-79765800	Weak transcription	Lung	lung
37	chr6:79733200-79743000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:79733200-79743000	Weak transcription	NHEK	skin
39	chr6:79733200-79746200	Weak transcription	Fetal Lung	lung
40	chr6:79733200-79746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:79733200-79747000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:79733200-79747800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:79733200-79747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:79733200-79751000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:79733200-79761800	Weak transcription	Thymus	Thymus
46	chr6:79733600-79765200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:79733800-79759800	Weak transcription	HMEC	breast
48	chr6:79734000-79768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:79734200-79747000	Weak transcription	Placenta	Placenta
50	chr6:79734800-79758400	Weak transcription	Fetal Muscle Trunk	muscle

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