Variant report

Variant	rs56926933
Chromosome Location	chr6:79896944-79896945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484945	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1335536	1.00[EUR][1000 genomes]
rs16890581	1.00[EUR][1000 genomes]
rs196711	1.00[EUR][1000 genomes]
rs196718	1.00[EUR][1000 genomes]
rs196719	1.00[EUR][1000 genomes]
rs35686657	1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56177348	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56735945	1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[EUR][1000 genomes]
rs60420555	1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[EUR][1000 genomes]
rs6904575	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6917206	1.00[EUR][1000 genomes]
rs73464137	1.00[EUR][1000 genomes]
rs73464147	1.00[EUR][1000 genomes]
rs73466210	1.00[EUR][1000 genomes]
rs73466218	1.00[EUR][1000 genomes]
rs73466221	1.00[EUR][1000 genomes]
rs73466224	1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73764092	1.00[EUR][1000 genomes]
rs73767528	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73767530	0.82[AFR][1000 genomes]
rs7753588	1.00[EUR][1000 genomes]
rs7762406	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79883000-79925000	Weak transcription	Pancreas	Pancrea
2	chr6:79890800-79897600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:79890800-79902000	Weak transcription	Esophagus	oesophagus
4	chr6:79892800-79900800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:79893000-79902200	Weak transcription	Left Ventricle	heart
6	chr6:79895000-79897400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:79895000-79898400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:79895000-79901200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:79895600-79897600	Weak transcription	Liver	Liver
10	chr6:79895800-79897800	Enhancers	HepG2	liver
11	chr6:79896600-79898400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:79896800-79899800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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