Variant report

Variant	rs55654065
Chromosome Location	chr6:79845416-79845417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10484945	1.00[EUR][1000 genomes]
rs1335536	1.00[EUR][1000 genomes]
rs16890581	1.00[EUR][1000 genomes]
rs35686657	1.00[EUR][1000 genomes]
rs55779333	1.00[EUR][1000 genomes]
rs55786726	1.00[EUR][1000 genomes]
rs56125439	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56177348	1.00[EUR][1000 genomes]
rs56735945	1.00[EUR][1000 genomes]
rs56926933	1.00[EUR][1000 genomes]
rs57810626	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58284219	1.00[EUR][1000 genomes]
rs59392118	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60132767	1.00[EUR][1000 genomes]
rs60420555	1.00[EUR][1000 genomes]
rs61411441	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61649774	1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	1.00[EUR][1000 genomes]
rs73462296	1.00[EUR][1000 genomes]
rs73464119	1.00[EUR][1000 genomes]
rs73464137	1.00[EUR][1000 genomes]
rs73464147	1.00[EUR][1000 genomes]
rs73466210	1.00[EUR][1000 genomes]
rs73466218	1.00[EUR][1000 genomes]
rs73466221	1.00[EUR][1000 genomes]
rs73466224	1.00[EUR][1000 genomes]
rs73466237	1.00[AFR][1000 genomes]
rs73466240	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466263	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466271	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466273	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466290	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73764092	1.00[EUR][1000 genomes]
rs73767528	1.00[EUR][1000 genomes]
rs7762406	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79844600-79845600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:79845400-79846200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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