Variant report
| Variant | rs73466237 |
|---|---|
| Chromosome Location | chr6:79822879-79822880 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:79787781..79789616-chr6:79822786..79824625,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000146247 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs55654065 | 1.00[AFR][1000 genomes] |
| rs56125439 | 0.85[AFR][1000 genomes] |
| rs57810626 | 1.00[AFR][1000 genomes] |
| rs59392118 | 0.88[AFR][1000 genomes] |
| rs61411441 | 1.00[AFR][1000 genomes] |
| rs73466240 | 1.00[AFR][1000 genomes] |
| rs73466263 | 1.00[AFR][1000 genomes] |
| rs73466271 | 1.00[AFR][1000 genomes] |
| rs73466273 | 1.00[AFR][1000 genomes] |
| rs73466290 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830705 | chr6:79659297-79829530 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv518477 | chr6:79700159-79850427 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
