Variant report
| Variant | rs73466240 |
|---|---|
| Chromosome Location | chr6:79824473-79824474 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:79787781..79789616-chr6:79822786..79824625,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000146247 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10484945 | 1.00[EUR][1000 genomes] |
| rs1335536 | 1.00[EUR][1000 genomes] |
| rs35686657 | 1.00[EUR][1000 genomes] |
| rs55654065 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55779333 | 1.00[EUR][1000 genomes] |
| rs55786726 | 1.00[EUR][1000 genomes] |
| rs56125439 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56177348 | 1.00[EUR][1000 genomes] |
| rs56735945 | 1.00[EUR][1000 genomes] |
| rs56926933 | 1.00[EUR][1000 genomes] |
| rs57810626 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58284219 | 1.00[EUR][1000 genomes] |
| rs59392118 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60132767 | 1.00[EUR][1000 genomes] |
| rs60420555 | 1.00[EUR][1000 genomes] |
| rs61411441 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61649774 | 1.00[EUR][1000 genomes] |
| rs6904575 | 1.00[EUR][1000 genomes] |
| rs6917206 | 1.00[EUR][1000 genomes] |
| rs73462283 | 1.00[EUR][1000 genomes] |
| rs73462294 | 1.00[EUR][1000 genomes] |
| rs73462296 | 1.00[EUR][1000 genomes] |
| rs73464119 | 1.00[EUR][1000 genomes] |
| rs73464137 | 1.00[EUR][1000 genomes] |
| rs73464147 | 1.00[EUR][1000 genomes] |
| rs73466210 | 1.00[EUR][1000 genomes] |
| rs73466218 | 1.00[EUR][1000 genomes] |
| rs73466221 | 1.00[EUR][1000 genomes] |
| rs73466224 | 1.00[EUR][1000 genomes] |
| rs73466237 | 1.00[AFR][1000 genomes] |
| rs73466263 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73466271 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73466273 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73466290 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73764092 | 1.00[EUR][1000 genomes] |
| rs73767528 | 1.00[EUR][1000 genomes] |
| rs7762406 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830705 | chr6:79659297-79829530 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv518477 | chr6:79700159-79850427 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79824200-79825400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
