Variant report

Variant	rs73464119
Chromosome Location	chr6:79678999-79679000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79677433..79679075-chr6:79680462..79682504,2	K562	blood:
2	chr6:79659133..79661012-chr6:79677242..79679903,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs35686657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654065	1.00[EUR][1000 genomes]
rs55682143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56125439	1.00[EUR][1000 genomes]
rs56735945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57023887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59392118	1.00[EUR][1000 genomes]
rs60132767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904575	1.00[EUR][1000 genomes]
rs6917206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73466263	1.00[EUR][1000 genomes]
rs73466271	1.00[EUR][1000 genomes]
rs73466273	1.00[EUR][1000 genomes]
rs73466290	1.00[EUR][1000 genomes]
rs73764092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648000-79681200	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:79648800-79714400	Weak transcription	Gastric	stomach
3	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
4	chr6:79649600-79681400	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:79658600-79695000	Weak transcription	Pancreas	Pancrea
6	chr6:79658800-79681200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:79659000-79680000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:79659200-79680600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:79659200-79681400	Strong transcription	Adipose Nuclei	Adipose
10	chr6:79659200-79702800	Weak transcription	Psoas Muscle	Psoas
11	chr6:79659400-79680400	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:79659400-79680600	Strong transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:79659400-79681200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr6:79659400-79681200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:79659400-79681200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:79659400-79702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
18	chr6:79659600-79680600	Strong transcription	Primary T cells from cord blood	blood
19	chr6:79659600-79681000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:79659600-79681200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:79659600-79704000	Weak transcription	Lung	lung
22	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
23	chr6:79659800-79681200	Strong transcription	Fetal Thymus	thymus
24	chr6:79659800-79681400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:79659800-79681400	Strong transcription	Primary hematopoietic stem cells	blood
26	chr6:79659800-79681400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:79659800-79681400	Strong transcription	Liver	Liver
28	chr6:79659800-79681400	Strong transcription	Dnd41	blood
29	chr6:79659800-79684600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:79659800-79702600	Weak transcription	Right Ventricle	heart
31	chr6:79659800-79703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:79660000-79681400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:79660200-79681200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:79660200-79681200	Strong transcription	Primary B cells from cord blood	blood
37	chr6:79660600-79681200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:79661200-79681400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:79661800-79681200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:79662400-79681200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:79662400-79681400	Strong transcription	Fetal Intestine Large	intestine
42	chr6:79662800-79681400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:79663200-79681400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:79663200-79681400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:79663200-79687200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:79664200-79679800	Strong transcription	HSMM	muscle
47	chr6:79664200-79695000	Weak transcription	Fetal Stomach	stomach
48	chr6:79664200-79698000	Weak transcription	Fetal Intestine Small	intestine
49	chr6:79664200-79702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:79666800-79681200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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