Variant report

Variant	rs73462283
Chromosome Location	chr6:79630339-79630340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79623461..79625036-chr6:79628400..79630450,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs35686657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55682143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786726	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56735945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57023887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810626	1.00[EUR][1000 genomes]
rs58284219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60132767	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61411441	1.00[EUR][1000 genomes]
rs61649774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466221	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466224	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466240	1.00[EUR][1000 genomes]
rs73764092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79626000-79644000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:79629000-79630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79629400-79634600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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