Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12106197	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1233773	1.00[CEU][hapmap]
rs16995871	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs200777	1.00[CEU][hapmap]
rs6034206	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034207	1.00[CEU][hapmap]
rs6034208	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs6043312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043313	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043314	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043316	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043326	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043334	1.00[EUR][1000 genomes]
rs6043336	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043337	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043340	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043341	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043343	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043344	1.00[EUR][1000 genomes]
rs6043357	1.00[CEU][hapmap]
rs6043361	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043371	1.00[EUR][1000 genomes]
rs6105425	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6110647	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7274583	1.00[CEU][hapmap]
rs73260615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15463200-15466200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15463200-15467400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:15465400-15467200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr20:15465600-15466400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr20:15465600-15466800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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