Variant report
Variant | rs6110647 |
---|---|
Chromosome Location | chr20:15497646-15497647 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12106197 | 1.00[CEU][hapmap] |
rs1233773 | 1.00[CEU][hapmap] |
rs16995871 | 1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs200777 | 1.00[CEU][hapmap] |
rs6034206 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6034207 | 1.00[CEU][hapmap] |
rs6034208 | 1.00[CEU][hapmap] |
rs6043312 | 1.00[EUR][1000 genomes] |
rs6043313 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043314 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043316 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043319 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043326 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043334 | 1.00[EUR][1000 genomes] |
rs6043336 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043337 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043338 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043340 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043341 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043343 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043344 | 1.00[EUR][1000 genomes] |
rs6043357 | 1.00[CEU][hapmap] |
rs6043361 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs6043371 | 1.00[EUR][1000 genomes] |
rs6105425 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs7274583 | 1.00[CEU][hapmap] |
rs73260615 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15496400-15502200 | Weak transcription | Fetal Brain Male | brain |
2 | chr20:15496800-15497800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |